CX308548

Overview
NameCX308548
Unique NameCX308548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308548_ssr53 microsatellite CX308548_ssr53:53..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.256e-13
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   84 ETFLEVILAILLPPVGVFLRYGC-GVEFWICLLLTVLGYIPGIIYAIYVLVG**IKNYDVVTEL 272
            E F E+++AILLPP+GV L+ GC  VEF ICL+LT+LGYIPGIIYA+YV+V    +N +  TEL
Sbjct:    6 EVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV---FQNREGSTEL 66          
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.141e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 ETFLEVILAILLPPVGVFLRYGC-GVEFWICLLLTVLGYIPGIIYAIYVLV 233
            E   E+I+AILLPP+GV  R GC  VEF ICL+LT+LGY+PGIIYAIYV+V
Sbjct:    6 EILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIV 56          
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.389e-12
Identity = 30/46 (65.22%), Postives = 42/46 (91.30%), Query Frame = 3
Query:   96 EVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 233
            ++ILAI+LPPVGVFL  GCG +F+I +LLT+LGYIPGII+A+Y+++
Sbjct:   20 KIILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYIIL 65          
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.369e-12
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:   84 ETFLEVILAILLPPVGVFLRYGC-GVEFWICLLLTVLGYIPGIIYAIYVL 230
            E   E+ +AILLPPVGV LR+GC  VEF+ICL+LT LGY+PGIIYAIY +
Sbjct:    6 ELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.001e-12
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 3
Query:   96 EVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 233
            ++I+AI+LPP+GVFL  GC   FWI ++LT+LGYIPGII+A+YV++
Sbjct:   10 KIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVIL 55          
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: PMP3_CRYNE (Plasma membrane proteolipid 3 OS=Cryptococcus neoformans GN=PMP3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.420e-11
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 3
Query:   96 EVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 233
            ++ILAI+LPP+GVFL  GCG +  I +LLT+LGYIPGII+A+Y+++
Sbjct:   10 KIILAIILPPLGVFLERGCGADLLINILLTILGYIPGIIHALYIIL 55          
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.834e-11
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 3
Query:  102 ILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVLV 233
            I A+LLPP+GVFL  GC     IC+LLT+LGYIPGIIYA YV++
Sbjct:   12 ICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVIL 55          
BLAST of CX308548 vs. ExPASy Swiss-Prot
Match: Y567_PSEAE (UPF0057 membrane protein PA0567 OS=Pseudomonas aeruginosa GN=PA0567 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.834e-11
Identity = 26/46 (56.52%), Postives = 40/46 (86.96%), Query Frame = 3
Query:   93 LEVILAILLPPVGVFLRYGCGVEFWICLLLTVLGYIPGIIYAIYVL 230
            + +++AILLPP+GVFL+ G G  FW+ +LLT+LGYIPGI++A+Y++
Sbjct:    4 IRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYII 49          
The following BLAST results are available for this feature:
BLAST of CX308548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RC23_ARATH1.256e-1360.94UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
RC24_ARATH8.141e-1368.63UPF0057 membrane protein At4g30660 OS=Arabidopsis ... [more]
PMP3_GIBZE1.389e-1265.22Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
RC22_ARATH2.369e-1268.00UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
PMP3_DEBHA9.001e-1260.87Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]
PMP3_CRYNE3.420e-1160.87Plasma membrane proteolipid 3 OS=Cryptococcus neof... [more]
YCU3_CAEEL5.834e-1165.91UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
Y567_PSEAE5.834e-1156.52UPF0057 membrane protein PA0567 OS=Pseudomonas aer... [more]

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Properties
Property NameValue
Genbank descriptionC21001B11Rv AbsLeaSub1 Citrus clementina cDNA clone C21001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308548 ID=CX308548; Name=CX308548; organism=Citrus clementina; type=EST; length=426bp
GCGGGGGAAGCACTTCTAATTTTTCATCAGTTATCATCATCGGCTGCTGT
TGCTTCTTCTTCTTCTTCTTGTGAATGGGTTCCGAGACTTTCCTAGAAGT
GATTCTGGCCATTCTGCTTCCTCCTGTTGGTGTCTTCCTACGTTATGGCT
GTGGGGTGGAGTTCTGGATATGTTTGTTGCTGACAGTATTGGGCTACATA
CCGGGGATTATATATGCGATTTATGTGTTAGTTGGATGATAAATTAAAAA
TTATGATGTTGTAACGGAGTTAATTTGATATCTTTTTTTTTTTTCTTTTT
TGTCCAAATTTGTTGGTGAACTAATAGATGTAACGTTGACGGTTGGGTTT
GTTAAAAAAAAAAAAAAACCANAAAAAAAAAAAAAAAAAAAAAAAAAGGC
CCANAAAAAAAAAAAAAAAAAAAAAA
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