CX308549

Overview
NameCX308549
Unique NameCX308549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length243
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15280 contig Ccv1_Contig15280:247..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.105e-21
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = -3
Query:    2 IRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 223
            IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +
Sbjct:   69 IRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAW 142          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.973e-21
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = -3
Query:    2 IRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 223
            IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +
Sbjct:   81 IRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAW 154          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.041e-20
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = -3
Query:    2 KELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 232
            ++ IR+ R A+  G +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +
Sbjct:   64 RQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAW 140          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = -3
Query:    2 EEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 241
            E ++E IRL+REAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +
Sbjct:   63 EAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAF 142          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = -3
Query:    2 QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 235
            ++E I L R+A+ +G +YV  E KL+F+IRIRGIN + PK +KI+QLLRL QI NGVF+K NKAT  ML  VEPYVTY
Sbjct:   67 EREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTY 144          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = -3
Query:    2 KELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 232
            K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTY
Sbjct:   66 KSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTY 142          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.964e-19
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = -3
Query:    2 KELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 232
            K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTY
Sbjct:   66 KSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTY 142          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.565e-19
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = -3
Query:    2 QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 235
            ++ +I+ KREAK  G +YV  + KL+F+IRI+GIN + PK +K+LQLLRL QI +GVF+KV KAT  +L  VEPYV Y
Sbjct:   58 ERAVIQAKREAKANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLVEPYVAY 135          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = -3
Query:    2 QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 235
            ++E IRL+R AK  G F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V Y
Sbjct:   64 EREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAY 141          
BLAST of CX308549 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.714e-19
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = -3
Query:    2 QKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTY 235
            ++E I L R+A+ +G ++V  E KL+F++RIRGIN + PK +KI+QLLRL QI NG+F+K NKA   ML  VEPYVTY
Sbjct:   66 EREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTY 143          
The following BLAST results are available for this feature:
BLAST of CX308549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL7_BOVIN6.105e-2163.5160S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT7.973e-2163.5160S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_CHICK1.041e-2059.7460S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7_YARLI3.030e-2057.5060S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7C_SCHPO3.030e-2061.5460S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL72_PARTE1.964e-1954.5560S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE1.964e-1954.5560S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7_ASHGO2.565e-1956.4160S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7_NEUCR3.350e-1958.9760S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7B_SCHPO5.714e-1956.4160S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC21001B12Rv AbsLeaSub1 Citrus clementina cDNA clone C21001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308549 ID=CX308549; Name=CX308549; organism=Citrus clementina; type=EST; length=243bp
CATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGTGTGGCTTTG
TTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGAGAAGCTG
CAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGAATCCTGA
TAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAATCCACCCTTAAGC
TTGGCCTCACGCTTCAAACGAATGAGTTCTTTTTGCTCTTCAT
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