CX308586

Overview
NameCX308586
Unique NameCX308586
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:257..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB4_PEA (Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 2.380e-19
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL DS   +  + KL+ HA  VF M  +SA+QLR +G+V + + TL   GA+H + GV++ HF V K +LL+TIKEA
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDVTL---GAIHIQKGVIDPHFVVVKEALLDTIKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB2_PEA (Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  SW   K+N     + F+  I E AP+A+ LFSFL D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +T   LGA+H + GV + HF V K +LL+TIK+A
Sbjct:    3 FTDKQEALVNSSWESFKQNLSGNSILFYTIILEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNAT---LGAIHVQRGVTDPHFVVVKEALLQTIKKA 118          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB3_VICFA (Leghemoglobin 49 OS=Vicia faba PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.543e-18
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  SW   K+N     + F+  I E AP+A+ +FSFL DS   +  + KL+ HA  VF M  +SA+QL+  G+V ++  +L   GA+H + GVV+ HF V K +LL+TIKEA
Sbjct:    3 FTQQQEALVNSSWESFKQNPS-YSVLFYTIILEKAPAAKGMFSFLKDS-AGVVDSPKLQAHAEQVFGMVRDSAIQLQATGEVVLKNGSL---GAIHIQKGVVDPHFVVVKEALLKTIKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB2_SESRO (Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.488e-18
Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL DS+   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+KEA
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDSDGVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLKEA 119          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB1_MEDTR (Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.862e-18
Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            +FT++QEALV  S+   K+N     + F+  I E AP+A+ LFSFL DS   ++ + +L+ HA  VF +  +SA QLR  G V + ++    LGA+H + GVV+ HF V K +LL+TIKEA
Sbjct:    2 SFTDKQEALVNSSYEAFKQNLSGYSVFFYTVILEKAPAAKGLFSFLKDS-AGVQDSPQLQAHAEKVFGLVRDSASQLRATGGVVLGDAA---LGAIHIQKGVVDPHFVVVKEALLKTIKEA 118          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB1_LUPLU (Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 7.655e-18
Identity = 55/119 (46.22%), Postives = 74/119 (62.18%), Query Frame = -1
Query:    4 TEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFL-GDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 357
            T+ Q ALV  S+     N  +   +FF  + EIAP A+ LFSFL G S VP + N  L+ HA  VF +T E+A+QL+  G V   ++TLK LG+VH   GVV+ HF V K ++L+TIKE
Sbjct:    5 TDVQVALVKSSFEEFNANIPKNTHRFFTLVLEIAPGAKDLFSFLKGSSEVP-QNNPDLQAHAGKVFKLTYEAAIQLQVNGAV-ASDATLKSLGSVHVSKGVVDAHFPVVKEAILKTIKE 121          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGBA_PHAVU (Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.306e-17
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = -1
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  SW   K N  +  + F+  I E AP+A+ LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H + GV N+ F V K +LL+T+K+A
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKGVSNDQFLVVKEALLKTLKQA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB_LOTJA (Leghemoglobin OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT +QEALV  S+   KKN     + F+  I EIAP+A+ +FSFL +S    + + +L+ HA  VF +T ++A QL   G+VT+ +++   LGAVH +  V + HF V K +LL+T+KEA
Sbjct:    3 FTAQQEALVGSSYETFKKNLPTNSVLFYTVILEIAPTAKDMFSFLKESGP--KHSPQLQAHAEKVFALTRDAATQLVAKGEVTLADAS---LGAVHVQKAVTDPHFVVVKEALLQTVKEA 117          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB3_SESRO (Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.705e-17
Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  S+   K+N     + F+  I E AP+A+ +FSFL D +   + N  L+ HA  VF +  +SA QLR  G V + +++   LG+VH + GV++ HF V K +LL+T+KEA
Sbjct:    3 FTEKQEALVNASYEAFKQNLPGNSVLFYSFILEKAPAAKGMFSFLKDFDEVPQNNPSLQAHAEKVFGLVRDSAAQLRATGVVVLADAS---LGSVHVQKGVLDPHFVVVKEALLKTLKEA 119          
BLAST of CX308586 vs. ExPASy Swiss-Prot
Match: LGB1_VICFA (Leghemoglobin-1 OS=Vicia faba PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 6.481e-17
Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = -1
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLGDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  S  + K+N     + F+  I + AP+A+ +FSFL DS   +  + KL  HA  VF M  +SAVQLR  G+V +      K G++H + GV++ HF V K +LL+TIKEA
Sbjct:    3 FTEKQEALVNSSSQLFKQNPSNYSVLFYTIILQKAPTAKAMFSFLKDS-AGVVDSPKLGAHAEKVFGMVRDSAVQLRATGEVVLD----GKDGSIHIQKGVLDPHFVVVKEALLKTIKEA 117          
The following BLAST results are available for this feature:
BLAST of CX308586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB4_PEA2.380e-1945.83Leghemoglobin Lb120-8 OS=Pisum sativum PE=2 SV=3[more]
LGB2_PEA5.302e-1945.00Leghemoglobin Lb5-10 OS=Pisum sativum PE=2 SV=3[more]
LGB3_VICFA1.543e-1845.00Leghemoglobin 49 OS=Vicia faba PE=2 SV=3[more]
LGB2_SESRO4.488e-1843.33Leghemoglobin 2 OS=Sesbania rostrata GN=GLB2 PE=1 ... [more]
LGB1_MEDTR5.862e-1843.80Leghemoglobin 1 OS=Medicago truncatula GN=LB1 PE=2... [more]
LGB1_LUPLU7.655e-1846.22Leghemoglobin-1 OS=Lupinus luteus PE=1 SV=3[more]
LGBA_PHAVU1.306e-1743.80Leghemoglobin A OS=Phaseolus vulgaris PE=1 SV=2[more]
LGB_LOTJA1.705e-1742.50Leghemoglobin OS=Lotus japonicus PE=2 SV=1[more]
LGB3_SESRO1.705e-1742.50Leghemoglobin 3 OS=Sesbania rostrata GN=GLB3 PE=2 ... [more]
LGB1_VICFA6.481e-1744.17Leghemoglobin-1 OS=Vicia faba PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC21001F01Rv AbsLeaSub1 Citrus clementina cDNA clone C21001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308586 ID=CX308586; Name=CX308586; organism=Citrus clementina; type=EST; length=447bp
TGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCT
CATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTT
GATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTC
ACACGTCATAACAAAAACAGACATGGCATGGGTCTTGAGCTTCTGGTTCT
GCTCTAGAGGCACATTTGAGTCTCCCAAGAATGAGAACAGCTTTTGGGCT
GATGGTGCAATCTCAAAGATCCTCAAGAAAAATTTAAGACCCAATTCTCC
AGCATTCTTCTTCATTACATTCCATGACTTAACAACTAAAGCTTCTTGCT
CTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGATTTCTATTTG
GACACCTGAGGATTGAATGTGATACACAAAATGTTGTTGAATCCCCG
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