CX308587

Overview
NameCX308587
Unique NameCX308587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10023 contig Ccv1_Contig10023:405..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 255
            L L  N ++G IP ELG L  L ++D+  N+  GEIP S   L  L +LRL+ N L+G +P  +  LS L   D+S N L G  P
Sbjct:  108 LLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTP 192          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 LELYMNDISGKIPKELGN-LKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFE-NNKLNGPEL 324
            L+L  ND+SG IP ++ + L  LV++D+  NKL G IP      K L  L L++NKL+GSIP +L+ L  L+   ++ N L GTIP +     F  + F  NN L G  L
Sbjct:  101 LDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSE--LARFGGDDFSGNNGLCGKPL 208          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD-GPFRSFPMESFENNKLNG 315
            + +  + I G +  ELG +  L  + ++ N L G IPK   NLK+LK L L NN L G IP E+ +LS + + ++ +NGL G +P + G  +       + N+L G
Sbjct:   74 INISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAELGNLKYLRELHIDRNRLQG 179          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   22 ISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNGPELQGLVP 339
            I+G+IP  + +L SL  +D+  NK+ GEIP     L  L  L L  N+++G IP  LT+L +LK  +++ NG+ G IP D  F S  M S     L   EL G +P
Sbjct:  123 ITGEIPPCITSLASLRILDLAGNKITGEIPAEIGKLSKLAVLNLAENQMSGEIPASLTSLIELKHLELTENGITGVIPAD--FGSLKMLS--RVLLGRNELTGSIP 224          

HSP 2 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   16 NDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 255
            N+++G IP+ +  ++ L  +D+ +N +EG IP+   N+K L  L L+ N LTG IP  L + S L V ++S N L GTIP
Sbjct:  217 NELTGSIPESISGMERLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIP 296          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 1
Query:   19 DISGKIPKELGNLKSLVSMDMYQ-NKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD-GPFRSFPMESFENNKLNGPELQGLVPYDFG 351
            +ISG+IP E+G+L  L S+   +   L G I  + A LK+L FLRL+   LTG +P  L+ L +L+  D+S N L G+IP      R         NKL GP     +P  FG
Sbjct:   81 EISGQIPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGP-----IPESFG 188          

HSP 2 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSD-LKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNG 315
            L L   +++G +P+ L  LK+L  +D+  N L G IP S ++L+ L++L L+ NKLTG IP    T S  +    +S+N L GTIP       F       NKL G
Sbjct:  124 LRLSWTNLTGPVPEFLSQLKNLEYIDLSFNDLSGSIPSSLSSLRKLEYLELSRNKLTGPIPESFGTFSGKVPSLFLSHNQLSGTIPKSLGNPDFYRIDLSRNKLQG 229          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 48/118 (40.68%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNGPEL-----QGLVP 339
            L L  N  SG+IP+ L +L +LV +++ +N+  GEI   F NL  LK L L NNKL+GS+   L     L  F+VSNN L G+IP     + F  +SF    L G  L     +G VP
Sbjct:  124 LYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSGSL---LDLDLSLDQFNVSNNLLNGSIPKS--LQKFDSDSFVGTSLCGKPLVVCSNEGTVP 236          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   16 NDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 255
            N + GKIP EL N K LVS+ +  N   GEIP S A+L  L +L L++N LTG IP+ L  L  L +F+VS NGL G +P
Sbjct:  423 NRLLGKIP-ELKNCKKLVSLSLAGNAFTGEIPPSLADLHVLTYLDLSDNSLTGLIPQGLQNLK-LALFNVSFNGLSGEVP 500          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 28/85 (32.94%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 255
            +++Y  ++ G IP++L  L+ L ++++ QN L G +P +  NL  ++++    N L+G IP+E+  L+DL++  +S+N   G+IP
Sbjct:  103 IKVYAMEVVGSIPQQLWTLEYLTNLNLGQNVLTGSLPPALGNLTRMRWMTFGINALSGPIPKEIGLLTDLRLLSISSNNFSGSIP 187          
BLAST of CX308587 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    4 ELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANL-KSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD-GPFRSFPMESFENNKLNGPELQGL 333
            ++ +N  SG  P  L N+ SL S+ +  N   G +   F  L  +L+ L L  N+ TG+IP+ L  +S L+ FD+S+N L G+IP+  G  R+       NN L      GL
Sbjct:  223 QIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSGL 334          

HSP 2 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 38/112 (33.93%), Postives = 57/112 (50.89%), Query Frame = 1
Query:    1 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVD-GPFRSFPMESFENNKLNGPELQGL 333
            ++LY N ISG+IP   GN+  L  + +  N   G IP+S    + L  L ++ N+L G+IP+E+  +  L   D+SNN L G  P + G            NKL+G   Q +
Sbjct:  422 VDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAI 533          
The following BLAST results are available for this feature:
BLAST of CX308587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
Y5457_ARATH1.764e-1142.35Probable LRR receptor-like serine/threonine-protei... [more]
Y1719_ARATH2.303e-1140.91Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y1634_ARATH2.303e-1134.91Probable LRR receptor-like serine/threonine-protei... [more]
DR100_ARATH2.303e-1139.62DNA-damage-repair/toleration protein DRT100 OS=Ara... [more]
PGIP2_ARATH3.008e-1138.94Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
RLK90_ARATH5.131e-1140.68Probable inactive receptor kinase RLK902 OS=Arabid... [more]
Y5694_ARATH6.702e-1150.00Probably inactive leucine-rich repeat receptor-lik... [more]
Y5614_ARATH6.702e-1132.94Probable LRR receptor-like serine/threonine-protei... [more]
EFR_ARATH8.753e-1134.82LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC21001F02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308587 ID=CX308587; Name=CX308587; organism=Citrus clementina; type=EST; length=547bp
TTGGAGCTTTACATGAATGACATAAGTGGGAAAATTCCGAAAGAGTTAGG
TAATTTGAAAAGCCTTGTCAGCATGGATATGTATCAGAATAAACTGGAAG
GAGAAATACCAAAGTCCTTTGCCAATTTGAAGTCACTTAAATTTCTGCGG
TTGAACAACAACAAACTAACAGGATCAATTCCGAGGGAGCTGACCACCCT
GTCGGACCTCAAAGTTTTTGATGTTTCTAACAATGGTCTCTGTGGGACAA
TCCCTGTTGATGGTCCTTTTAGAAGCTTTCCTATGGAGAGTTTTGAAAAT
AATAAACTCAATGGACCAGAGCTGCAAGGACTGGTGCCTTATGATTTTGG
ATGCTGAAGAAGGTTGAAAACCCTCCGTCTTCTATTGAAGACCATAATGT
TAAAGACTCGTATAGGGTAAAATTATATCGTGTGCATCAGCTTGATCGAA
TGGCTAGATATATTATGTCAGCGGCAGTGACTGTTCATGTATGAAGTAAC
TAAAGCAATTAAAATAAGATTATGTAAGCTTATTTAAAAATCCACAA
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