CX308591

Overview
NameCX308591
Unique NameCX308591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12981 contig Ccv1_Contig12981:387..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: LCLT1_HUMAN (Lysocardiolipin acyltransferase 1 OS=Homo sapiens GN=LCLAT1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11
Identity = 37/134 (27.61%), Postives = 65/134 (48.51%), Query Frame = -3 
Query:    2 IKLFVDREAYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 403
            +K+ +  +A+  +  E ++++ NH++ +DW+  W    R   L      +K S K +P  GW+M  + Y+F+ R W  D+S  +  +    D  +P  L +F EGT  T+     +  +A   GL     VL P
Sbjct:  102 VKVIITGDAF--VPGERSVIIMNHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAYIFIHRKWKDDKSHFEDMIDYFCDIHEPLQLLIFPEGTDLTENSKSRSNAFAEKNGLQKYEYVLHP 233
[Close]
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: LCLT1_CHICK (Lysocardiolipin acyltransferase 1 OS=Gallus gallus GN=LCLAT1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.290e-11
Identity = 35/119 (29.41%), Postives = 59/119 (49.58%), Query Frame = -3 
Query:    2 EHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 358
            E ++++ NH++ +DW+  W    R   L      +K S K +P  GW+M  + ++F++R W  D+S  ++ L    D  +P  L +F EGT  T      + ++A   GL     VL P
Sbjct:   77 ERSVIIMNHRTRMDWMFLWNCLLRYSYLRLEKICLKSSLKSIPGFGWAMQVAAFIFIQRKWEDDKSHFENMLHYFCDIHEPLQLLIFPEGTDLTANTKARSNDFAEKNGLRKYEYVLHP 195
[Close]
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: LCLT1_MOUSE (Lysocardiolipin acyltransferase 1 OS=Mus musculus GN=Lclat1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 33/119 (27.73%), Postives = 57/119 (47.90%), Query Frame = -3 
Query:    2 EHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 358
            E ++++ NH++ +DW+  W    R   L      +K S K +P  GW+M  + ++F+ R W  D+S  +  +       +P  L +F EGT  T+     + ++A   GL     VL P
Sbjct:   77 ERSVIIMNHRTRVDWMFLWNCLMRYSYLRVEKICLKSSLKSVPGFGWAMQVAAFIFIHRKWKDDKSHFEDMIDYFCAIHEPLQLLIFPEGTDLTENNKARSNDFAEKNGLQKYEYVLHP 195
The following BLAST results are available for this feature:
BLAST of CX308591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LCLT1_HUMAN1.290e-1127.61Lysocardiolipin acyltransferase 1 OS=Homo sapiens ... [more]
LCLT1_CHICK1.290e-1129.41Lysocardiolipin acyltransferase 1 OS=Gallus gallus... [more]
LCLT1_MOUSE4.900e-1127.73Lysocardiolipin acyltransferase 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC21001F06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308591 ID=CX308591; Name=CX308591; organism=Citrus clementina; type=EST; length=480bp
AAGGAATTAAAACATTTCTAGGAATAGGCAATCCTGTTGAAGCAGCATAT
TCCTGAGCTGCTAAAAGCTTAGCCTGTGTAAATCGAGTTCCTTCTACAAA
GAGAGCTAACCAAAAGGGTTGAGGATAGTCTCTTAGACGTTGGAGACCTG
ACTTTAATGTGCTCTCATCCTTTGCCCAGTTTCTTTCCAGAAAGAGATAT
TCAGAAAACCACATTGACCAACCTATGACCGGAAGAAATTTTGATGATTT
CTTCATAACGGCCAATGTGCTACCAAGACAACCTGACCGCTGAGCCAAAA
CCCACCCAACAAGCCAGTCAATGTCACTTTTGTGATTGGAAACAACAAGT
GCATGTTCTTTACCCATTAATCGATACGCTTCACGGTCTACGAAAAGTTT
GATCTTAACTCCGGCCCACCAATCAACTATCCATACAAGTTCCAGCCATA
ACAATTCCGCTACCCATCTATTGATTCTCC
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