CX308599

Overview
NameCX308599
Unique NameCX308599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14605 contig Ccv1_Contig14605:197..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.579e-24
Identity = 49/109 (44.95%), Postives = 74/109 (67.89%), Query Frame = -3
Query:    2 TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 328
            T  PT+GF+++TV +K+    +WDVGGQ  +R  W++YF++T  LI+VVDS+DR+R+ +  +EL ++L E+ L  A LLV ANK DLP A++   I   L L S++  H
Sbjct:   43 TIEPTLGFDIKTVHFKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSIKTHH 151          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.693e-24
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = -3
Query:    2 GEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 340
            GE + TI PT+GFN++T+E+   +  +WDVGGQ  +R  WR+YF++T GL++VVDS DR R+     EL  +L E+ L  A LLV  NKQDLP A+++ EI + L L  +   H
Sbjct:   38 GEPIDTISPTLGFNIKTLEHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHH 151          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL3_CAEEL (ADP-ribosylation factor-like protein 3 OS=Caenorhabditis elegans GN=arl-3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.977e-23
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = -3
Query:    5 PTIGFNVETVEYK-NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 319
            PT GFNV+TV    +I   VWD+GGQ  IRP W +Y++N   LIFV+DSND+ R  E   EL  +L+E++LR   +L+FANKQDL  A ++ EIT KL L  LR R
Sbjct:   47 PTKGFNVKTVAAMGDIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKVPVLIFANKQDLVTAASSEEITRKLNLDLLRDR 152          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.977e-23
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -3
Query:    2 GEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 340
            GE ++TI PT+GFN++T+ YK     +WD+GGQ  +R  WR+Y++    +I+V+DS+D  RI + + EL ++L E++   A  LVFANKQDL  AM + EI+  L L  L   H
Sbjct:   38 GEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLNTHH 151          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.478e-22
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = -3
Query:   14 LKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 349
            L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L
Sbjct:   40 LQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGEL 156          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.478e-22
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = -3
Query:   14 LKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 349
            L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L
Sbjct:   40 LQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGEL 156          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.478e-22
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = -3
Query:   14 LKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 349
            L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L
Sbjct:   40 LQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGEL 156          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.478e-22
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = -3
Query:   14 LKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 349
            L+  E V T+PT GFN E ++      K ++F  WDVGGQ+K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L
Sbjct:   40 LQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGEL 156          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.292e-22
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = -3
Query:    2 GEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRH 340
            GE  + I PT+GFN++T+ Y+  +  +WDVGGQ  IR  WR+YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  + LL+ ANKQD+  A+   EI   L L S+ + RH
Sbjct:   38 GEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDKSRH 152          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL14_MOUSE (ADP-ribosylation factor-like protein 14 OS=Mus musculus GN=Arl14 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.299e-22
Identity = 49/106 (46.23%), Postives = 76/106 (71.70%), Query Frame = -3
Query:   38 LKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD-SNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 349
            LK  E + TIPTIGFNVE V+ ++ ++ TVWDVGGQ+K+R +W  Y +N QGL++VVD S  + R+ ++R E   +L  + +++  +++ ANKQDLP A++A +IT
Sbjct:   33 LKFAETLATIPTIGFNVEMVQLQSSLTLTVWDVGGQEKMRTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGALSAEDIT 138          
The following BLAST results are available for this feature:
BLAST of CX308599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
ARL2_CAEBR1.579e-2444.95ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL2_DROME2.693e-2446.49ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL3_CAEEL2.977e-2351.89ADP-ribosylation factor-like protein 3 OS=Caenorha... [more]
ARL2_DICDI2.977e-2343.86ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL4A_RAT1.478e-2243.59ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE1.478e-2243.59ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN1.478e-2243.59ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN1.478e-2243.59ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]
ARF5_ARATH3.292e-2244.35Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL14_MOUSE4.299e-2246.23ADP-ribosylation factor-like protein 14 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC21001G02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308599 ID=CX308599; Name=CX308599; organism=Citrus clementina; type=EST; length=351bp
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTTTTATATTCAACGGTCTCCA
CATTAAACCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGC
T
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