CX308861

Overview
NameCX308861
Unique NameCX308861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length376
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15153 contig Ccv1_Contig15153:199..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.420e-16
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = -3
Query:   12 NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 350
            +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL
Sbjct:   37 HFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDAHL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.420e-16
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = -3
Query:   12 NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 350
            +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL
Sbjct:   37 HFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.467e-16
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = -3
Query:   12 NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 350
            +F  G TN +PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M Y   A E A   ++R L  L+ HL
Sbjct:   32 HFHFGQTNHTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHYNKQATENAKDEVRRVLGLLDAHL 141          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.620e-16
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = -3
Query:   12 NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 350
            +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL
Sbjct:   37 HFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.620e-16
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = -3
Query:   12 NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 350
            +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL
Sbjct:   37 HFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.620e-16
Identity = 49/114 (42.98%), Postives = 66/114 (57.89%), Query Frame = -3
Query:   12 NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 350
            +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL
Sbjct:   37 HFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.300e-15
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = -3
Query:   12 GVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 374
            G  +K+A     F  G TN+SP FL   PLGKVP  +  DG  +FESNAIA Y++    ++ L GS+    A V QW+ F+  E+    S W++P LG MQ+   A E A   +KR L  LN HL
Sbjct:   26 GARLKIASAPPAFTFGQTNRSPAFLGNFPLGKVPAYQGDDGFCLFESNAIAHYLS----NDVLRGSTPQASAQVLQWVSFADSEVIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.300e-15
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = -3
Query:   12 GVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 374
            G  +K+A     F  G TN+SP FL   PLGKVP  +  DG  +FESNAIA +++    ++ L GS+    A V QW+ F+  EI    S W++P LG MQ+   A E A   +KR L  LN HL
Sbjct:   26 GARLKIASASPAFTFGQTNRSPAFLSNFPLGKVPAYQGDDGFCLFESNAIAHFLS----NDALRGSTPQASAQVLQWVSFADSEIIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.782e-15
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = -3
Query:   12 NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHL 350
            +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ +L
Sbjct:   37 HFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAYL 146          
BLAST of CX308861 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.623e-13
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = -3
Query:   39 GVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLCGSSL-IDYAHVEQWMDFSAMEIDANISRWLYPRLGYM--QYIPLAEEGAVAALKR 374
            G +VK+A+NF+ G TNKS EFLK  P GKVP  ET +G  + ESNAI    A L A+ QL G       A V+QW+ F+  EI      W++P LG +  Q    A++ A A L++
Sbjct:   26 GAQVKVADNFKFGETNKSAEFLKKFPGGKVPAFETAEGQYLSESNAI----AYLLANEQLRGGKCPFVQAQVQQWISFADNEIVPASCAWVFPLLGILPQQKNSTAKQEAEAVLQQ 137          
The following BLAST results are available for this feature:
BLAST of CX308861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
EF1G_RABIT3.420e-1643.86Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MOUSE3.420e-1643.86Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_PIG4.467e-1643.86Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]
EF1G_MACFA7.620e-1642.98Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HORSE7.620e-1642.98Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_BOVIN7.620e-1642.98Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1G_DANRE1.300e-1542.40Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_CARAU1.300e-1542.40Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_HUMAN3.782e-1542.11Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1G_DROME4.623e-1343.10Elongation factor 1-gamma OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC21004F10Rv AbsLeaSub1 Citrus clementina cDNA clone C21004F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308861 ID=CX308861; Name=CX308861; organism=Citrus clementina; type=EST; length=376bp
GTATTTGAAGCCAAATGAATGTTCAAAGCATCCAATGCTCTCTTCAGTGC
GGCAACAGCACCTTCCTCAGCCAGAGGAATGTATTGCATATATCCAAGTC
TTGGATATAACCACCTGGAGATATTAGCATCAATCTCCATGGCAGAAAAA
TCCATCCACTGCTCAACATGAGCATAATCGATCAGAGAAGAACCACATAG
TTGATTGTCAGCTTTCAGACGTGCAACATAACGGGCAATGGCATTGCTCT
CAAAAACCGGACCATCAGGTGTCTCCAACACAGGAACCTTCCCAAGAGGG
TTCATCTTCAAAAATTCAGGGGATTTATTAGTGACACCCATCTCAAAATT
CTCAGCCAATTTGACTTCCACACCAG
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