CX308876

Overview
NameCX308876
Unique NameCX308876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308876_ssr343 microsatellite CX308876_ssr343:343..362. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig425 contig Ccv1_Contig425:1..365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308876 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = -3 
Query:    1 STFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDPKKEFCCN 183
            +TFDPFA+A            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CN
Sbjct:    7 NTFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACN 67
[Close]
BLAST of CX308876 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = -3 
Query:    1 STFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDPKKEFCCN 183
            +T DPFA+A   +        VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CN
Sbjct:    7 NTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACN 67
The following BLAST results are available for this feature:
BLAST of CX308876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SUI1_ANOGA1.139e-1155.74Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME2.537e-1154.10Protein translation factor SUI1 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionC21004H03Rv AbsLeaSub1 Citrus clementina cDNA clone C21004H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308876 ID=CX308876; Name=CX308876; organism=Citrus clementina; type=EST; length=374bp
ATTACAGCAGAACTCTTTCTTGGGGTCCTTGAGAATCTTGTTGTAGCTGA
ATTCTTTCTTCAACCCTTGCACAGTTGTCAGGCTTTTCCTCCCATTACGT
TGCTGCACGCGAATATGCACATAATCTTTTGAACCAGCACCTGAGTCCTC
AGCATTTGCCTCAGCAAAGGGATCAAAGGTAGATGGAATCTGGGTGTCAA
ATTCAGACATGAAGCTTGGTTGTTGGAGTGTCAAAGAGTCCGTAACCAGC
AAGAAATTGGCTTCAATTCACTTAAATTGCTCTTAGCTTAAGAGGAAGAT
TGCGAATCAAACTGCCTTACGAGAGCGGAAACAAGAGAAGCCAGAGAGAG
AGAGAGAGAGAGACAGAGATCCCG
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