CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.721e-54
Identity = 109/206 (52.91%), Postives = 140/206 (67.96%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            ANF VYT LL P +RIM LD P GGHLSHGY T   KK+SA SIFFE+ PY+++  TGYIDY+++E+ A  +RPK+++ G S+Y R +DY R R++ +K  AV++ DMAHISGL+AA  + SPFDY D+VT+TTHKSL              K+  KQG  +        YDFE++IN AV P LQGGPHN+ I  LA+ALKQ  T
Sbjct:  152 ANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEV-------LYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 349          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 4.859e-54
Identity = 115/210 (54.76%), Postives = 141/210 (67.14%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKK---PRK-QGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A YT LL P DRIMGLD P GGHL+HGY +   K+VSA SIFFES PYK+NPQTG IDYE+L   A  +RP+++I G S+Y R  DY R R++ D+  A L+ DMAHISGL+AAK + SPF + D+VT+TTHK+L              +   P+  Q IP         Y FE+RINFAV PSLQGGPHN+ IAA+A+ALKQ  TP
Sbjct:  146 ANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIP---------YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.414e-53
Identity = 112/205 (54.63%), Postives = 137/205 (66.83%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            ANFAVYT L+ P  RIMGLD P GGHL+HG+ T G KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + PK++I G S Y R  DY R R+IAD+ GA LM DMAHISGL+AA  + SPF++C +VT+TTHK+L              +   Q +    G     Y+ E  IN AV P LQGGPHN+ IA +A+ALKQ  T
Sbjct:  123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-GKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFY----RKGVQSVDPKTGKEIL-YNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 321          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 208.379 bits (529), Expect = 2.412e-53
Identity = 113/206 (54.85%), Postives = 140/206 (67.96%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVYT LL P DRIMGLD P GGHL+HGY +   K++SA SIFFES PYK+NP+TG IDY +L   A  +RP+++I G S+Y R  DY R R++ D+  A L+ DMAHISGL+AAK + SPF + DIVT+TTHK+L             +K  K   P    +    Y FE+RINFAV PSLQGGPHN+ IAA+A+ALKQ  TP
Sbjct:  146 ANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTL---RGARSGLIFYRKGVKAVDPKTGRE--IPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53
Identity = 111/206 (53.88%), Postives = 139/206 (67.48%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A YT LL P DRIMGLD P GGHL+HGY +   K++SA SIFFES PYK+NPQTG IDY++L   A  ++P+++I G S+Y R  DY R R++ D+  A L+ DMAHISGL+AAK + SPF + DIVT+TTHK+L              +   Q +    G     Y FE+RINFAV PSLQGGPHN+ IAA+A+ALKQ  TP
Sbjct:  146 ANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFY----RKGVQAVDPKTGREIP-YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.114e-53
Identity = 112/208 (53.85%), Postives = 136/208 (65.38%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKK--PRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES  YKVNP TGYIDY++LEE A  + PK++I G S Y R  DYGR R+IAD+ GA LM DMAHISGL+ A  + SPF++C +VT+TTHK+L              +    K G  +        Y+ E  IN AV P LQGGPHN+ IA +A+ALKQ  TP
Sbjct:  123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEI-------LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 322          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 7.017e-53
Identity = 110/206 (53.40%), Postives = 138/206 (66.99%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + P+++I G S Y R  DY R R+IAD  GA LM DMAHISGL+AA  + SPF++C +V++TTHK+L             +K  +   P    +  + Y+ E  IN AV P LQGGPHN+ IA +A+ALKQ  TP
Sbjct:  123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTL---RGCRAGMIFYRKGVRSVDPKTGKE--TRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 322          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.017e-53
Identity = 112/208 (53.85%), Postives = 137/208 (65.87%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSN--YDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  L+ P +R+MGL  P GGHLSHGY T   +K+SA S +FESFPY+V+P+TG IDY+ LE+ A+ YRPKIL+ G S+Y R  DY R R+IADK GA LM DMAHISGL+AA  + SPF+Y DIVT+TTHKSL                 ++G+   H        YD E  INF+V P  QGGPHN+ I+ALA ALKQ  TP
Sbjct:  114 ANLQVYQALMKPHERLMGLHLPDGGHLSHGYQTET-RKISAVSTYFESFPYRVDPETGIIDYDTLEKNAVLYRPKILVAGTSAYCRLIDYKRMREIADKVGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFF-------RRGVRSVHPKTGEEVMYDLEGPINFSVFPGHQGGPHNHTISALATALKQATTP 313          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 206.453 bits (524), Expect = 9.164e-53
Identity = 109/206 (52.91%), Postives = 138/206 (66.99%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + P+++I G S Y R  DY R R+IAD  GA LM DMAH+SGL+AA  + SPF++C +V++TTHK+L             +K  +   P    +  + Y+ E  IN AV P LQGGPHN+ IA +A+ALKQ  TP
Sbjct:  123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTL---RGCRAGMIFYRKGVRSVDPKTGRE--TRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 322          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.666e-52
Identity = 111/205 (54.15%), Postives = 137/205 (66.83%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKVNP TGYI+Y++LEE A  + PK++I G S Y R  +Y R R+IAD+ GA LM DMAHISGL+AA  + SPF++C +VT+TTHK+L             +K  K   P    +    Y+ E  IN AV P LQGGPHN+ IA +A+ALKQ  T
Sbjct:  123 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTL---RGCRAGMIFYRKGVKSVDPKTGKE--ILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 321          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_ARATH3.721e-5452.91Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT4.859e-5454.76Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB1.414e-5354.63Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_HUMAN2.412e-5354.85Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN3.150e-5353.88Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_RABIT4.114e-5353.85Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_SHEEP7.017e-5353.40Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_ASHGO7.017e-5353.85Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_BOVIN9.164e-5352.91Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_HUMAN2.666e-5254.15Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
back to top