CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.482e-52
Identity = 105/207 (50.72%), Postives = 136/207 (65.70%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN   Y+ ++   DR+MGLD P GGHLSHGY  P G K+S  S +F++ PY V+ QTG IDY+ L + +  +RPK+++ G S+Y R  DY RF++IAD CGA LM DMAHISGL+AA    SPF+Y DIVT+TTHKSL              +K  K+G  +        YD ++RINF+V P  QGGPHN+ I+ALA+ALKQ ATP
Sbjct:  138 ANLYAYSAVMETNDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFQTMPYHVDSQTGIIDYDFLSKTSKLFRPKVIVAGASAYSRVLDYKRFKEIADACGAYLMSDMAHISGLVAAGVTRSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGVRKVTKKGKEV-------LYDLDKRINFSVFPGHQGGPHNHTISALAVALKQAATP 337          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.482e-52
Identity = 103/207 (49.76%), Postives = 137/207 (66.18%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN   Y+ ++  GDR+MGLD P GGHLSHGY    G K+S  S +F++  Y+V+P TG +DY+ L E +  +RPK+++ G S+Y R  DY RFR+IAD CGA L+ DMAH+SGL+AA    SPF+Y DIVT+TTHKSL              +K  K+G  +        YD ++RINF+V P+ QGGPHN+ I+ALA+ALKQ ATP
Sbjct:  137 ANLYAYSAIMEVGDRMMGLDLPHGGHLSHGYQLQNGNKISYISKYFQTMAYRVDPATGLVDYDTLSETSKLFRPKVIVAGTSAYARVLDYKRFREIADACGAYLLSDMAHVSGLVAAGVHPSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGIRKVTKKGTEI-------MYDLDKRINFSVFPAHQGGPHNHTISALAVALKQAATP 336          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.482e-52
Identity = 109/207 (52.66%), Postives = 135/207 (65.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  ++ P  R+MGLD PSGGHLSHGY T   KK+SA S +FES PY+V+P TG IDY+ LE  A  +RPKIL+ G S+Y R  DY R RQIAD   A L+ DMAHISGL++A  + SPF+Y D+VT+TTHKSL              +K  K+G P+        YD E++INF+V P  QGGPHN+ I ALA+ALKQ   P
Sbjct:  109 ANMQVYQAIMPPHGRLMGLDLPSGGHLSHGYQTDT-KKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDKKGNPI-------YYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEP 307          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 4.548e-52
Identity = 110/205 (53.66%), Postives = 137/205 (66.83%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            ANFAVYT L+ P  RIMGLD P GGHL+HG+ T   KK+SA SIFFES PYKV P+TGYI+Y++LEE A  + PK++I G S Y R  DY R R+IAD  GA LM DMAHISGL+AA  + SPF++C +VT+TTHK+L             +K  +   P    +  + Y+ E  IN AV P LQGGPHN+ IA +A+ALKQ  T
Sbjct:  117 ANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTL---RGCRAGMIFYRKGVRSVDPKTGKE--TYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 315          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 102/207 (49.28%), Postives = 134/207 (64.73%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPR-KQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN   Y  ++ P DR+MGLD P GGHLSHG+ TP  K +SA S +F + PY VN +TG IDY+ LE+ A+ +RPK+++ G S+Y R  DY R R+I + C A L+CDMAHISGL+AA  + SPF+Y DIVT+TTHKSL              +   K+G P+        Y+ E++INF+V P  QGGPHN+ I ALA+AL Q  TP
Sbjct:  115 ANLQAYQAVMKPHDRLMGLDLPHGGHLSHGFSTPQ-KAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFYRKGTRSHDKRGNPI-------LYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTP 313          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.728e-51
Identity = 112/214 (52.34%), Postives = 137/214 (64.02%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSN--------YDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  ++ P +R+MGLD P GGHLSHGY T   +K+SA S +FE+ PY+V+ +TG IDY+ LE+ A+ YRPK+L+ G S+Y R  DY R R+IADK GA L+ DMAHISGLIAA  + SPF+Y DIVT+TTHKSL             + PR   I    G    N        YD E  INF+V P  QGGPHN+ IAALA ALKQ  TP
Sbjct:  115 ANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTDS-RKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSL-------------RGPRGAMIFFRRGVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTP 314          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.029e-51
Identity = 110/213 (51.64%), Postives = 136/213 (63.85%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSN-------YDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY+ L+   DR+MGLD P GGHLSHGY TP  KK+S  S +FE+ PY+++ +TGYIDY KLEE A+ YRPKI++ G S+Y R  DY R R+I DK  A LM DMAHISGL+AAK +  PF + DIVT+T+HKSL             + PR   I    G   +N       Y+ E  IN +V P  QGGPHN+ IAALA+ALKQ  TP
Sbjct:  152 ANLYVYSALMDTHDRLMGLDLPHGGHLSHGYQTPT-KKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVAGASAYSRLIDYARLREICDKVNAYLMADMAHISGLVAAKVMPGPFTHADIVTTTSHKSL-------------RGPRGAMIFFRRGVRRTNKKGEEELYNLETPINASVFPGHQGGPHNHTIAALAVALKQAQTP 350          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.120e-50
Identity = 103/207 (49.76%), Postives = 134/207 (64.73%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSN-YDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN   Y+ ++  GDR+MGLD P GGHLSHGY  P G K+S  S +F + PY VN +TG IDY+ L   +  +RPK+++ G S+Y R+ DY RFR+IAD CGA L+ DMAHISGL+AA  + SPF++ DIVT+TTHKSL                RK    +N   G    + F++ INF+V P  QGGPHN+ I+ALA+ALKQ  TP
Sbjct:  124 ANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYDTLAMTSKLFRPKVIVAGTSAYSRKLDYARFRKIADGCGAYLLSDMAHISGLVAANVIDSPFEHSDIVTTTTHKSLRGPRGAMIFY------RKGIKKVNKKTGKETPFTFDKTINFSVFPGHQGGPHNHTISALAVALKQAKTP 324          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.113e-49
Identity = 107/214 (50.00%), Postives = 136/214 (63.55%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSN--------YDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  ++    R+MGLD P GGHLSHGY TP  +K+SA S +FE+ PY+VN  TG IDY+ LE+ A  +RPK+L+ G S+Y R  DY R R+IAD  GA L+ DMAHISGLIA++ + SPF Y D+VT+TTHKSL             + PR   I    G    +        YD E++INF+V P  QGGPHN+ I ALA+ALKQ A+P
Sbjct:  115 ANLQVYQAIMPVHGRLMGLDLPHGGHLSHGYQTPQ-RKISAVSTYFETMPYRVNIDTGLIDYDTLEKNAQLFRPKVLVAGTSAYCRLIDYERMRKIADSVGAYLVVDMAHISGLIASEVIPSPFLYADVVTTTTHKSL-------------RGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINFSVFPGHQGGPHNHTITALAVALKQAASP 314          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.051e-48
Identity = 98/207 (47.34%), Postives = 132/207 (63.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY+ ++  G+R+MGLD P GGHLSHGY    G  +S  S +F+S PY V+  TG IDY+ L+  A  +RPK+++ G S+Y R  DY RF++I+  CGA LM DMAHISGL+AA  + SPF++ DIVT+TTHKSL              K   K+G  +        Y+ E++INF+V P  QGGPHN+ I A+A+ALKQ  +P
Sbjct:  130 ANLYVYSAIMNVGERLMGLDLPDGGHLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSAYSRLIDYARFKEISQGCGAYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIKSVTKKGKEI-------PYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSP 329          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_KLULA3.482e-5250.72Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ASHGO3.482e-5249.76Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYD_SCHPO3.482e-5252.66Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_MOUSE4.548e-5253.66Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_SCHPO1.728e-5149.28Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_CANAL1.728e-5152.34Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_NEUCR5.029e-5151.64Putative serine hydroxymethyltransferase, mitochon... [more]
GLYM_CANGA1.120e-5049.76Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR2.113e-4950.00Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_YEAST3.051e-4847.34Serine hydroxymethyltransferase, mitochondrial OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
back to top