CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.729e-46
Identity = 99/207 (47.83%), Postives = 130/207 (62.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL-XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN   Y+ +L  GDRIMGLD P GGHLSHGY T    K+S  S +F++ PY++N +TG IDY+ LE+ A  +RPK+++ G S+Y R  DY R RQ++ + GA L+ DMAHISGL++A    SPF Y DIVT+TTHKSL              +K   +G  +        Y+ E +INF V P  QGGPHN+ I+ALA+ALKQ   P
Sbjct:  136 ANLYAYSAILEVGDRIMGLDLPHGGHLSHGYQTKT-TKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAGASAYSRVIDYKRMRQLSIRLGAYLLSDMAHISGLVSAVVTDSPFPYSDIVTTTTHKSLRGPRGAMIFFRKGIRKVTTKGKEI-------PYELERKINFLVFPGHQGGPHNHTISALAVALKQCTEP 334          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.490e-44
Identity = 99/206 (48.06%), Postives = 127/206 (61.65%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFA+YT ++ PG RIMGLD PSGGHL+HGY T   +K+SA+S++F+S PY V    G IDYE LE+   D+ P ILICG S+Y R+ DY R + IA + GA L  D++HIS L+A+  + SPF++CDIV +TT K L             +   K G            D + RINFAV P LQGGPHN+ IA +A AL    TP
Sbjct:  111 ANFAIYTAVVPPGGRIMGLDLPSGGHLTHGYKTKT-RKISASSVYFDSRPYTVG-SNGLIDYEGLEKTFTDFLPHILICGYSAYSRDIDYKRLQSIAGRNGAFLFADISHISPLVASGLMNSPFEHCDIVMTTTQKGL--RGPRGALIFYRRAVTKNG---------ETVDLDARINFAVFPMLQGGPHNHTIAGIASALLHAGTP 303          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.589e-39
Identity = 89/205 (43.41%), Postives = 125/205 (60.98%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN AVY   L PGD I+G+  P GGHL+HG       KVS +  +F +  Y +N + G +DYE++  KA++ +PKILI G S+YPR  D+ +FR+IAD+ GA+LM DMAH +GL+A     SPF Y D+VT+TTHKSL             + PR   I           ++ + I+ AV P +QGGPH++  AA+A+ALK+ +T
Sbjct:  106 ANMAVYLAFLKPGDTILGMALPHGGHLTHG------SKVSISGKYFNAVSYALNEE-GILDYEEIRNKALECKPKILIAGHSAYPRILDFAKFREIADEVGALLMVDMAHFAGLVAGGVHPSPFPYADVVTTTTHKSL-------------RGPRGAMI-------MCKAEYAKAIDKAVFPGMQGGPHDSTTAAIAVALKEAST 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.088e-37
Identity = 88/206 (42.72%), Postives = 127/206 (61.65%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  LL P D+I+G+D   GGHL+HG       KV+A+   ++SF Y VN + G+IDY+++ + A   +PK+++CG S+YPR  D+ +FR+IAD+ GA+LM D+AHI+GL+AA E  SPF YCD+VT+TTHK+L             + PR   I  N      + D  ++IN A+ P +QGGP  + IAA A+   +   P
Sbjct:   97 ANQGVYLALLKPYDKILGMDLSHGGHLTHG------AKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPRVIDFKKFREIADEVGALLMADIAHIAGLVAAGEHPSPFPYCDVVTTTTHKTL-------------RGPRGGMIMTN------DADIAKKINSAIFPGIQGGPLVHVIAAKAVGFGENLKP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNY3 (Serine hydroxymethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.855e-37
Identity = 85/206 (41.26%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +FE   Y V  +TG +DY+K+ ++A++ +PK+LICG S+YPR+ ++ +FR IAD+ GA LM D+AHI+GL+A+    SP  YCD+VT+TTHK+L             + PR   I  N      N +  ++ + +V P  QGGP  + I A A+A  +   P
Sbjct:  102 ANFAVFLTLLQPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFEVAHYGVEKETGRLDYDKIRQQALEVKPKLLICGYSAYPRQIEFDKFRAIADEVGAYLMADIAHIAGLVASGHHPSPLPYCDVVTTTTHKTL-------------RGPRGGLIMTN------NEELGKKFDKSVFPGTQGGPLEHVITAKAVAFGEALKP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_RHILO (Serine hydroxymethyltransferase 2 OS=Rhizobium loti GN=glyA2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.855e-37
Identity = 88/206 (42.72%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D++MGL  P GGHL+HG+       V+ +   ++  PY ++ +T  IDY++L E A   RPK++  GG+SYPR +DY    +IA +  + L+ D+AHISGLI A    +P  +CD+VTST+HKS+              K   +   L H    S ++  +RI+ AV P LQGGPH N IAALA+AL++ ATP
Sbjct:  105 ANQAVYRALLSPRDKVMGLPLPEGGHLTHGW------SVNFSGTDYQRVPYGLHDKTQQIDYDRLRETARRERPKLIWVGGTSYPRVFDYAAMAEIALEANSYLVADIAHISGLIVAGAHPNPVVHCDVVTSTSHKSI----RGPRGGFILSKNEDRYQALYH--STSKHNLAKRIDRAVFPQLQGGPHMNTIAALAVALQEAATP 298          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.049e-37
Identity = 89/212 (41.98%), Postives = 121/212 (57.08%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL------XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  +L PGD+ MGL+   GGHLSHG        V+ + I +    Y +N +TG +DY+++EE A+  +PK++I GGS+Y REWDY R R+IADK GA+LM DMAH +GLIAA  L +P  Y  IVTSTTHK+L                   KK  K  I +            + ++ AV P +QGGP  + IAA A+A  ++  P
Sbjct:   93 ANAAVFLAVLNPGDKFMGLNLAHGGHLSHG------SLVNTSGIIYTPCEYNLNQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGVIMMGKDFPNPWGKKTPKGEIKM----------MSQLLDSAVFPGVQGGPLEHVIAAKAVAFGEILQP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS9 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9902) GN=glyA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.207e-37
Identity = 86/206 (41.75%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMGLD   GGHL+HG        V+ +  +F    Y V+P T  +D E + + A++++PK+++CG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L     C + +F ++ + AV P  QGGP  + IAA A+A  +   P
Sbjct:  106 ANFAVFLALLKPGDTIMGLDLSHGGHLTHG------SPVNVSGKWFNVVQYGVDPTTQRLDMEAIRKLALEHKPKLIVCGYSAYPRTIDFAAFRSIADEVGAFLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDAEFAKKFDKAVFPGTQGGPLEHVIAAKAVAFGEALQP 286          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_RHOPA (Serine hydroxymethyltransferase 2 OS=Rhodopseudomonas palustris GN=glyA2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.202e-36
Identity = 87/206 (42.23%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+GLD  +GGHL+HG        V+ +  +F++  Y V+P+T  ID +++  +A  +RP++LI GGS+YPR  D+GRFRQIAD+ GA+LM DMAH +GL+A     SP  + D+VTSTTHK+L             + PR   +  N      + +  ++IN A  P LQGGP  + IAA A+A  +   P
Sbjct:  116 ANQAVFLALLAPGDTILGLDLKAGGHLTHG------APVNMSGRWFKAVSYGVDPETHRIDMDQVAVQARQHRPRLLIAGGSAYPRIIDFGRFRQIADEVGAILMVDMAHFAGLVAGGVYPSPVPFADVVTSTTHKTL-------------RGPRGGFVLTN------DANIAKKINSATFPGLQGGPLMHVIAAKAVAFGEALQP 296          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS3 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9311) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.570e-36
Identity = 86/206 (41.75%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD I+G+D   GGHL+HG        V+ +  +F    Y V+ +T  +D E + + A++++PK++ICG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA   ASP  +CD+VT+TTHK+L             + PR  G+ L     C + +F  R + AV P  QGGP  + IAA A+A  +   P
Sbjct:  106 ANFAVFLALLQPGDTILGMDLSHGGHLTHG------SPVNVSGKWFNVVQYGVDKETQRLDMEAIRKLALEHKPKLIICGYSAYPRSIDFAAFRSIADEVGAYLLADMAHIAGLVAAGVHASPVPHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDAEFARRFDKAVFPGSQGGPLEHVIAAKAVAFGEALQP 286          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_CANAL3.729e-4647.83Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ENCCU3.490e-4448.06Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_DESPS2.589e-3943.41Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_NITSB1.088e-3742.72Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_SYNY31.855e-3741.26Serine hydroxymethyltransferase OS=Synechocystis s... [more]
GLYA2_RHILO1.855e-3742.72Serine hydroxymethyltransferase 2 OS=Rhizobium lot... [more]
GLYA_BACTN7.049e-3741.98Serine hydroxymethyltransferase OS=Bacteroides the... [more]
GLYA_SYNS99.207e-3741.75Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA2_RHOPA1.202e-3642.23Serine hydroxymethyltransferase 2 OS=Rhodopseudomo... [more]
GLYA_SYNS31.570e-3641.75Serine hydroxymethyltransferase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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