CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_RHORT (Serine hydroxymethyltransferase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.570e-36
Identity = 88/206 (42.72%), Postives = 121/206 (58.74%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL PGD I+GLD  +GGHL+HG        V+ +  +F +  Y V+P+T  ID E++ + A  +RPK+LI GGS+YPR  D+ RFRQIAD+ GA+LM DMAH +GL+A     SP  + D++TSTTHK+L             + PR   +  N      +    ++IN AV P LQGGP  + IAA A+A  +   P
Sbjct:  116 ANQAVFLALLAPGDTILGLDLKAGGHLTHG------APVNISGRWFTAVSYGVDPRTHLIDMEQMADLARRHRPKLLIAGGSAYPRLLDFARFRQIADEVGAILMVDMAHFAGLVAGGVYPSPVPFADVITSTTHKTL-------------RGPRGGFVLTN------DAAIAKKINSAVFPGLQGGPLMHIIAAKAVAFGEALDP 296          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPX (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH8102) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 86/206 (41.75%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMGLD   GGHL+HG        V+ +  +F    Y V+ +T  +D E + + A++++PK+++CG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L     C + DF ++ + AV P  QGGP  + IAA A+A  +   P
Sbjct:  106 ANFAVFLALLQPGDTIMGLDLSHGGHLTHG------SPVNVSGKWFNVVQYGVDRETQRLDMEAIRQLALEHKPKLIVCGFSAYPRTIDFAAFRAIADEVGAFLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDADFAKKFDKAVFPGSQGGPLEHVIAAKAVAFGEALQP 286          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LYSSC (Serine hydroxymethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=glyA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G++   GGHL+HG        V+ + I +    Y V   T  IDYE + +KA++++PK+++ G S+YPRE D+ +FR+IAD+ GA  M DMAHI+GL+A  E  SP  Y D VTSTTHK+L             + PR  G+ L      ++ ++E+++N +V P +QGGP  + IAA A+A  +V  P
Sbjct:   99 ANMAVYHTILEPGDTVLGMNLSHGGHLTHG------SPVNFSGILYNFVEYGVTKDTQVIDYEDVRQKALEHKPKLIVAGASAYPREIDFSKFREIADEVGAYFMVDMAHIAGLVAVGEHQSPVPYADFVTSTTHKTL-------------RGPR-GGLIL------ASKEWEQKLNKSVFPGIQGGPLMHVIAAKAVAFGEVLQP 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP8 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F+   Y VNP T  +DY+++ E A+  RPK+LICG S+YPR  ++ +FR IAD+ GA LM D+AHI+GL+A     SP  YCD+VT+TTHK+L             + PR  G+ L       + D  ++ + AV P  QGGP  + IAA  +A  +   P
Sbjct:  102 ANFAVFLALLSPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFKVCHYGVNPDTERLDYDQIRELALKERPKLLICGYSAYPRIIEFDKFRAIADEIGAYLMADIAHIAGLVATGHHPSPISYCDVVTTTTHKTL-------------RGPR-GGLILTR-----DADLGKQFDKAVFPGTQGGPLEHVIAAKGVAFGEALKP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 89/212 (41.98%), Postives = 120/212 (56.60%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSL------XXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  +L PGD+ MGL+   GGHLSHG        V+ + I +    Y +N +TG +DY+++EE A+  +PK++I GGS+Y REWDY R R+IADK GA+LM DMAH +GLIAA  L +P  Y  IVTSTTHK+L                   KK  K  I +            + ++ AV P +QGGP  + IAA A+A  +   P
Sbjct:   93 ANAAVFLAVLNPGDKFMGLNLAHGGHLSHG------SLVNTSGIIYTPCEYNLNKETGRVDYDQMEEIALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGVIMMGKDFPNPWGKKTPKGEIKM----------MSQLLDSAVFPGIQGGPLEHVIAAKAVAFGECLQP 288          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNR3 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain RCC307) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 82/206 (39.81%), Postives = 125/206 (60.68%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD I+G+D   GGHL+HG        V+ +  +F++  Y V+P+T  ++ E + + A++++PK+++CG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA    SP  +C +VT+TTHK+L             + PR  G+ L     C++ DF ++ + AV P  QGGP  + +AA A+A  +   P
Sbjct:  100 ANFAVFLALLKPGDTILGMDLSHGGHLTHG------SPVNVSGKWFKAVHYGVDPETQQLNLESIRQLALEHKPKLIVCGYSAYPRSIDFAGFRAIADEVGAYLLADMAHIAGLVAAGVHPSPVPHCHVVTTTTHKTL-------------RGPR-GGLIL-----CNDADFAKQFDKAVFPGTQGGPLEHVVAAKAVAFGEALQP 280          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ERYLH (Serine hydroxymethyltransferase OS=Erythrobacter litoralis (strain HTCC2594) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 87/205 (42.44%), Postives = 119/205 (58.05%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      ID +++ E A +++PK++ICGG++Y R WD+ RFR+IAD+  A L+CDM+HISGL+A     SPF +  IVTSTTHKSL             + PR  GI L      ++ D  + +N AV P LQGGP  + +AA A+A ++   P
Sbjct:  114 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNISGKWFNPVSYGVRKDDELIDMDEVAETAREHKPKLIICGGTAYSRLWDFPRFREIADEVDATLLCDMSHISGLVAGGAHPSPFPHAHIVTSTTHKSL-------------RGPR-SGIIL-----WNDEDLTKPLNMAVFPGLQGGPLMHVVAAKAVAFREALRP 293          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNSC (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9605) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.569e-36
Identity = 85/206 (41.26%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMGLD   GGHL+HG        V+ +  +F    Y V+ +T  +D E + + A++++PK+++CG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L     C + +F ++ + AV P  QGGP  + IAA A+A  +   P
Sbjct:  106 ANFAVFLALLQPGDTIMGLDLSHGGHLTHG------SPVNVSGKWFNVVQYGVDKETQRLDMEAIRQLALEHKPKLIVCGYSAYPRTIDFAAFRAIADEVGAYLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDAEFAKKFDKAVFPGSQGGPLEHVIAAKAVAFGEALQP 286          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPW (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH7803) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.569e-36
Identity = 85/206 (41.26%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMGLD   GGHL+HG        V+ +  +F    Y V+ +T  +D E + + A++++PK+++CG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L     C + +F ++ + AV P  QGGP  + IAA A+A  +   P
Sbjct:  106 ANFAVFLALLQPGDTIMGLDLSHGGHLTHG------SPVNVSGKWFNVVQYGVDKETQRLDMEAIRQLALEHKPKLIVCGFSAYPRTIDFAAFRAIADEVGAYLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDAEFAKKFDKAVFPGSQGGPLEHVIAAKAVAFGEALRP 286          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROM3 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.968e-36
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F+   Y V P +  +D E + + A+  RP+++ICG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L     C + DF  + + AV P  QGGP  + IAA A+AL +   P
Sbjct:  106 ANFAVFLALLQPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFKVVHYGVEPDSQQLDMEAVRQLALKERPQLIICGYSAYPRTIDFAAFRSIADEVGAYLLADMAHIAGLVAAGVHPSPIAHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDADFGRKFDKAVFPGSQGGPLEHVIAAKAVALGEALQP 286          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_RHORT1.570e-3642.72Serine hydroxymethyltransferase 1 OS=Rhodospirillu... [more]
GLYA_SYNPX2.051e-3641.75Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_LYSSC2.051e-3640.78Serine hydroxymethyltransferase OS=Lysinibacillus ... [more]
GLYA_CYAP82.679e-3642.23Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_BACV82.679e-3641.98Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_SYNR33.499e-3639.81Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_ERYLH3.499e-3642.44Serine hydroxymethyltransferase OS=Erythrobacter l... [more]
GLYA_SYNSC4.569e-3641.26Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_SYNPW4.569e-3641.26Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_PROM35.968e-3642.23Serine hydroxymethyltransferase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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