CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_PHOPR (Serine hydroxymethyltransferase 1 OS=Photobacterium profundum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD ++G+    GGHL+HG        V+ +   +   PY ++ +TG IDYE++E  A++++PK++I G S+Y +  D+ R R+IADK GA    DMAH++GLIAA    +P  +  +VT+TTHK+L               PR   I  N G+        +++N AV P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANNAVYMALLNPGDTVLGMSLAHGGHLTHG------SPVNFSGKLYNIIPYGID-ETGQIDYEEMEALALEHKPKMIIGGFSAYSQVVDWKRMREIADKVGAYFFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILSNDGEA-----LYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEAMEP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRAW (Serine hydroxymethyltransferase OS=Streptomyces avermitilis GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 78/205 (38.05%), Postives = 114/205 (55.61%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN A    LL PGD IMGL+   GGHL+HG       K++ +   +    Y V+  TG +D  ++E+ A + RPK+++ G S+YPR+ D+  FR+IAD+ GA LM DMAH +GL+AA    +P  +  +VT+TTHK+L                 + G+ L      S  +  ++IN AV P  QGGP  + IAA A++ K  A+
Sbjct:  101 ANAAAMFALLKPGDTIMGLNLAHGGHLTHGM------KINFSGKLYNVVAYHVDETTGQVDMAEVEKLAKESRPKLIVAGWSAYPRQLDFAAFRRIADEVGAYLMVDMAHFAGLVAAGLHPNPVPHAHVVTTTTHKTLGGP--------------RGGVIL------STAELAKKINSAVFPGQQGGPLEHVIAAKAVSFKVAAS 279          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y  ++ PGD +MGL+   GGHL+HG+      K       ++  PY V  +   IDY+++E+ A +++PK++I G S+YPR  D+ RFR+IAD  GAV + DMAHISGL+AA    +P ++ DIVTSTTHK+L             + PR  GI L      +   + + I+  V P  QGGP  + +AA A+   +   P
Sbjct:  104 ANQAAYGAVVSPGDTVMGLNLAHGGHLTHGHALNFSGKT------YKIVPYNVRKEDELIDYDEVEKLAREHQPKMIIAGASAYPRIIDFARFRKIADAVGAVFLVDMAHISGLVAAGVHPNPCEFADIVTSTTHKTL-------------RGPR-AGIIL------AREKYGKEIDKNVFPGTQGGPLVHVMAAKAVCFLEALQP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHESW (Serine hydroxymethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDYE++E  A++++PK++I G S+Y    D+ + R+IADK GA L  DMAH++GLIAA    +P  +  +VTSTTHK+L                 + G+ L+  D   + D  +++N AV P  QGGP  + IA  A+A K+   P
Sbjct:  101 ANSAVYMALLKPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIIPYGID-ESGKIDYEEMERIAIEHKPKMMIGGFSAYSGIVDWAKMREIADKIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGP--------------RGGVILSAAD---DEDLYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHELP (Serine hydroxymethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 78/206 (37.86%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ ++G IDY+++E  A++++PK++I G S+Y    D+ R R+IADK GA L  DMAH++GLIAA    +P  +  +VTSTTHK+L                 + GI L+     ++ D  +++N AV P  QGGP  + IA  A+A K+  +P
Sbjct:  101 ANSAVYMALLQPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMERLAVEHKPKMMIGGFSAYSGIVDWARMREIADKIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGP--------------RGGIILS---AANDEDLYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALSP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD ++G++   GGHL+HG        V+ +   +   PY ++ +TG IDY+++E  A++++PK++I G S+Y    D+ R R+IADK GA L  DMAH++GL+AA    +P  +  +VTSTTHK+L                 + GI L+     ++ D  +++N AV P  QGGP  + IA  A+A K+   P
Sbjct:  101 ANSAVYMTLLQPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIIPYGID-ETGKIDYDEMERLAVEHKPKMMIGGFSAYSGIVDWARMREIADKIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTSTTHKTLAGP--------------RGGIILS---AANDEDLYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PSEA6 (Serine hydroxymethyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 77/206 (37.38%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV+  LL  GD ++G+    GGHL+HG H      VS +   + +  Y ++ QTG IDY+ +E  A++++PK++I G S+Y    D+ RFR+IADK GA L+ DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L+    C +    +++N +V P  QGGP  + IAA A+A K+   P
Sbjct:  101 ANSAVFMALLDAGDTVLGMSLAHGGHLTHGAH------VSFSGKTYNAVQYGIDEQTGKIDYDVVEALAVEHKPKMIIGGFSAYSGIVDWQRFREIADKVGAYLLVDMAHVAGLVAAGLYPNPLPHAHVVTTTTHKTLAGP--------------RGGLILS---ACGDEAIYKKLNSSVFPGNQGGPLCHVIAAKAVAFKEALQP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30
Identity = 77/206 (37.38%), Postives = 112/206 (54.37%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY   L PGD ++G++   GGHL+HG        V+ +  ++    Y V+  T  IDYE++   A + +PK+++ G S+YPR  D+ +FR+IAD  GA LM DMAHI+GL+A     +P +Y D VT+TTHK+L             + PR   I            + + I+ A+ P LQGGP  + IAA A+A K+   P
Sbjct:   99 ANIGVYFATLEPGDTVLGMNLSHGGHLTHG------SPVNISGAYYNFVAYGVDSVTHRIDYEEVMRVAQEAKPKMIVAGASAYPRAIDFKKFREIADAVGAYLMVDMAHIAGLVAVGLHQNPCEYADFVTTTTHKTL-------------RGPRGGAI-------LCKEKYAKIIDKAIFPGLQGGPLMHVIAAKAVAFKEALEP 278          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFA (Serine hydroxymethyltransferase OS=Xylella fastidiosa GN=glyA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.196e-30
Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD I+G+    GGHL+HG +      V+ +   F +  Y VN Q G IDYE +E  A+++RPK+++ G S+Y ++ D+ RFR IAD+ GA L+ DMAH++GL+AA    +P  +  +VTSTTHK+L             + PR   I              +++   V P +QGGP  + IAA A+A K+   P
Sbjct:  101 ANQAVYFALLQPGDTILGMSLAHGGHLTHGAN------VNVSGKLFNAVQYGVNGQ-GLIDYEAVESLALEHRPKMVVAGFSAYSQKIDWARFRAIADQVGAYLLVDMAHVAGLVAACVYPNPLPHAHVVTSTTHKTL-------------RGPRGGIIVAQ----APQEALVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHIDS (Serine hydroxymethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.196e-30
Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANF VYT LL PGD ++G++   GGHL+HG        V+ +   +   PY ++  TG+IDY  LE++A +++PK++I G S+Y    D+ + R+IAD  GA L  DMAH++GL+AA    +P  +  +VT+TTHK+L                 + G+ L  G    + +  +++N AV P  QGGP  + IA  A+ALK+   P
Sbjct:  101 ANFTVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_PHOPR1.288e-3038.83Serine hydroxymethyltransferase 1 OS=Photobacteriu... [more]
GLYA_STRAW1.682e-3038.05Serine hydroxymethyltransferase OS=Streptomyces av... [more]
GLYA_SOLUE1.682e-3038.83Serine hydroxymethyltransferase OS=Solibacter usit... [more]
GLYA_SHESW1.682e-3037.86Serine hydroxymethyltransferase OS=Shewanella sp. ... [more]
GLYA_SHELP1.682e-3037.86Serine hydroxymethyltransferase OS=Shewanella loih... [more]
GLYA_SHEAM1.682e-3037.86Serine hydroxymethyltransferase OS=Shewanella amaz... [more]
GLYA_PSEA61.682e-3037.38Serine hydroxymethyltransferase OS=Pseudoalteromon... [more]
GLYA_ALKMQ1.682e-3037.38Serine hydroxymethyltransferase OS=Alkaliphilus me... [more]
GLYA_XYLFA2.196e-3038.83Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_SHIDS2.196e-3037.38Serine hydroxymethyltransferase OS=Shigella dysent... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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