CX309079
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_PHOPR (Serine hydroxymethyltransferase 1 OS=Photobacterium profundum GN=glyA1 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.288e-30 Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGD ++G+ GGHL+HG V+ + + PY ++ +TG IDYE++E A++++PK++I G S+Y + D+ R R+IADK GA DMAH++GLIAA +P + +VT+TTHK+L PR I N G+ +++N AV P QGGP + IAA A+A K+ P Sbjct: 101 ANNAVYMALLNPGDTVLGMSLAHGGHLTHG------SPVNFSGKLYNIIPYGID-ETGQIDYEEMEALALEHKPKMIIGGFSAYSQVVDWKRMREIADKVGAYFFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAG-------------PRGGLILSNDGEA-----LYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEAMEP 281
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_STRAW (Serine hydroxymethyltransferase OS=Streptomyces avermitilis GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 78/205 (38.05%), Postives = 114/205 (55.61%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616 AN A LL PGD IMGL+ GGHL+HG K++ + + Y V+ TG +D ++E+ A + RPK+++ G S+YPR+ D+ FR+IAD+ GA LM DMAH +GL+AA +P + +VT+TTHK+L + G+ L S + ++IN AV P QGGP + IAA A++ K A+ Sbjct: 101 ANAAAMFALLKPGDTIMGLNLAHGGHLTHGM------KINFSGKLYNVVAYHVDETTGQVDMAEVEKLAKESRPKLIVAGWSAYPRQLDFAAFRRIADEVGAYLMVDMAHFAGLVAAGLHPNPVPHAHVVTTTTHKTLGGP--------------RGGVIL------STAELAKKINSAVFPGQQGGPLEHVIAAKAVSFKVAAS 279
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN A Y ++ PGD +MGL+ GGHL+HG+ K ++ PY V + IDY+++E+ A +++PK++I G S+YPR D+ RFR+IAD GAV + DMAHISGL+AA +P ++ DIVTSTTHK+L + PR GI L + + + I+ V P QGGP + +AA A+ + P Sbjct: 104 ANQAAYGAVVSPGDTVMGLNLAHGGHLTHGHALNFSGKT------YKIVPYNVRKEDELIDYDEVEKLAREHQPKMIIAGASAYPRIIDFARFRKIADAVGAVFLVDMAHISGLVAAGVHPNPCEFADIVTSTTHKTL-------------RGPR-AGIIL------AREKYGKEIDKNVFPGTQGGPLVHVMAAKAVCFLEALQP 283
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHESW (Serine hydroxymethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGD ++G++ GGHL+HG V+ + + PY ++ ++G IDYE++E A++++PK++I G S+Y D+ + R+IADK GA L DMAH++GLIAA +P + +VTSTTHK+L + G+ L+ D + D +++N AV P QGGP + IA A+A K+ P Sbjct: 101 ANSAVYMALLKPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIIPYGID-ESGKIDYEEMERIAIEHKPKMMIGGFSAYSGIVDWAKMREIADKIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGP--------------RGGVILSAAD---DEDLYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEP 282
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHELP (Serine hydroxymethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 78/206 (37.86%), Postives = 119/206 (57.77%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGD ++G++ GGHL+HG V+ + + PY ++ ++G IDY+++E A++++PK++I G S+Y D+ R R+IADK GA L DMAH++GLIAA +P + +VTSTTHK+L + GI L+ ++ D +++N AV P QGGP + IA A+A K+ +P Sbjct: 101 ANSAVYMALLQPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGID-ESGKIDYDEMERLAVEHKPKMMIGGFSAYSGIVDWARMREIADKIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGP--------------RGGIILS---AANDEDLYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALSP 282
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGD ++G++ GGHL+HG V+ + + PY ++ +TG IDY+++E A++++PK++I G S+Y D+ R R+IADK GA L DMAH++GL+AA +P + +VTSTTHK+L + GI L+ ++ D +++N AV P QGGP + IA A+A K+ P Sbjct: 101 ANSAVYMTLLQPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIIPYGID-ETGKIDYDEMERLAVEHKPKMMIGGFSAYSGIVDWARMREIADKIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTSTTHKTLAGP--------------RGGIILS---AANDEDLYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEALEP 282
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PSEA6 (Serine hydroxymethyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 77/206 (37.38%), Postives = 118/206 (57.28%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AV+ LL GD ++G+ GGHL+HG H VS + + + Y ++ QTG IDY+ +E A++++PK++I G S+Y D+ RFR+IADK GA L+ DMAH++GL+AA +P + +VT+TTHK+L + G+ L+ C + +++N +V P QGGP + IAA A+A K+ P Sbjct: 101 ANSAVFMALLDAGDTVLGMSLAHGGHLTHGAH------VSFSGKTYNAVQYGIDEQTGKIDYDVVEALAVEHKPKMIIGGFSAYSGIVDWQRFREIADKVGAYLLVDMAHVAGLVAAGLYPNPLPHAHVVTTTTHKTLAGP--------------RGGLILS---ACGDEAIYKKLNSSVFPGNQGGPLCHVIAAKAVAFKEALQP 283
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ALKMQ (Serine hydroxymethyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glyA PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.682e-30 Identity = 77/206 (37.38%), Postives = 112/206 (54.37%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN VY L PGD ++G++ GGHL+HG V+ + ++ Y V+ T IDYE++ A + +PK+++ G S+YPR D+ +FR+IAD GA LM DMAHI+GL+A +P +Y D VT+TTHK+L + PR I + + I+ A+ P LQGGP + IAA A+A K+ P Sbjct: 99 ANIGVYFATLEPGDTVLGMNLSHGGHLTHG------SPVNISGAYYNFVAYGVDSVTHRIDYEEVMRVAQEAKPKMIVAGASAYPRAIDFKKFREIADAVGAYLMVDMAHIAGLVAVGLHQNPCEYADFVTTTTHKTL-------------RGPRGGAI-------LCKEKYAKIIDKAIFPGLQGGPLMHVIAAKAVAFKEALEP 278
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFA (Serine hydroxymethyltransferase OS=Xylella fastidiosa GN=glyA PE=3 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.196e-30 Identity = 80/206 (38.83%), Postives = 115/206 (55.83%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 AN AVY LL PGD I+G+ GGHL+HG + V+ + F + Y VN Q G IDYE +E A+++RPK+++ G S+Y ++ D+ RFR IAD+ GA L+ DMAH++GL+AA +P + +VTSTTHK+L + PR I +++ V P +QGGP + IAA A+A K+ P Sbjct: 101 ANQAVYFALLQPGDTILGMSLAHGGHLTHGAN------VNVSGKLFNAVQYGVNGQ-GLIDYEAVESLALEHRPKMVVAGFSAYSQKIDWARFRAIADQVGAYLLVDMAHVAGLVAACVYPNPLPHAHVVTSTTHKTL-------------RGPRGGIIVAQ----APQEALVKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEP 282
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_SHIDS (Serine hydroxymethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glyA PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.196e-30 Identity = 77/206 (37.38%), Postives = 117/206 (56.80%), Query Frame = 2 Query: 2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619 ANF VYT LL PGD ++G++ GGHL+HG V+ + + PY ++ TG+IDY LE++A +++PK++I G S+Y D+ + R+IAD GA L DMAH++GL+AA +P + +VT+TTHK+L + G+ L G + + +++N AV P QGGP + IA A+ALK+ P Sbjct: 101 ANFTVYTALLEPGDTVLGMNLAHGGHLTHG------SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGP--------------RGGLILAKG---GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEP 282 The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bpback to top |