CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPA (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Paris) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.268e-35
Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   LL PGD  MG+  P GGHL+HG       KV+ +   + S  Y V+  TG IDY+ LE+ A+ ++PK++I G S+Y R  D+ RFR+IADK GA LM D+AH++GL+A     SP  Y D+VT+TTHK+L             + PR   I         N + E+++N +V P +QGGP  + IAA A+A  +   P
Sbjct:  101 ANAAVMMALLSPGDTFMGMALPHGGHLTHG------SKVNFSGKLYHSVEYGVDSNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTL-------------RGPRGGLILCK-----ENEEIEKKLNSSVFPGMQGGPLMHVIAAKAVAFAEALLP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROMT (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 82/206 (39.81%), Postives = 127/206 (61.65%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F++  Y+V+ +T  +D + + +KA++ +PK++ICG S+YPR+ D+  FR IAD+  A L+ D+AHI+GL+A+    SP  YCD+VT+TTHK+L             + PR  G+ L+      + +  ++++ AV P  QGGP  + IAA A+A K+ + P
Sbjct:   93 ANFAVFLSLLKPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFKTCHYEVDKKTEMLDMDAIRKKAIENQPKLIICGFSAYPRKIDFKAFRSIADEVNAYLLADIAHIAGLVASGLHPSPIPYCDVVTTTTHKTL-------------RGPR-GGLILS-----KDKEIGKKLDKAVFPGTQGGPLEHVIAAKAVAFKEASAP 273          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROM4 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 85/206 (41.26%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANF+V+  LL PG++IMG+D   GGHL+HG        V+ +  +F++  Y V+ +T  ++ E + E A+  RPK++ICG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+A     SP  +CD+VT+TTHK+L             + PR  G+ L     C N +F +R + AV P  QGGP  + IAA A+A  +   P
Sbjct:  101 ANFSVFLSLLEPGEKIMGMDLSHGGHLTHG------SPVNVSGKWFKAIHYGVDKETQRLEMENVREIALKNRPKLIICGYSAYPRNIDFLAFRSIADEVGAYLLADMAHIAGLVATGIHPSPIPHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRNAEFGKRFDKAVFPGSQGGPLEHVIAAKAVAFGEALKP 281          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.962e-35
Identity = 85/205 (41.46%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++E KA + RPK+++ GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SPF +C + T+TTHKSL             + PR   I  N      + D  ++ N AV P LQGGP  + IAA A+A  +   P
Sbjct:  106 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVREGDNLLDMDEVERKAKETRPKLILAGGTAYSRVWDWKRFREIADEVGAYLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSL-------------RGPRGGMILTN------DEDLAKKFNSAVFPGLQGGPLMHVIAAKAVAFGEALQP 285          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_METCA (Serine hydroxymethyltransferase OS=Methylococcus capsulatus GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.052e-35
Identity = 85/206 (41.26%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD ++G+    GGHL+HG       KV+ +   + +  Y +NP+TG IDY++++E A ++RPK+++ G S+Y +  D+ RFR IAD  GA LM DMAH++GLIAA    SP    D+ T+TTHK+L             + PR  G+ L      +N + E+++N  V P +QGGP  + IAA A+ALK+   P
Sbjct:  101 ANAAVYMALLKPGDTVLGMSLAHGGHLTHG------AKVNFSGKIYNAVQYGLNPETGEIDYDQVDELAREHRPKMIVAGFSAYSQVVDWQRFRAIADSVGAWLMVDMAHVAGLIAAGLYPSPVQIADVTTTTTHKTL-------------RGPR-GGLIL----AKANPEVEKQLNSLVFPGIQGGPLMHVIAAKAVALKEALQP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELPS (Serine hydroxymethyltransferase OS=Helicobacter pylori (strain Shi470) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.052e-35
Identity = 86/206 (41.75%), Postives = 124/206 (60.19%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D+I+G+D   GGHL+HG       KVS     ++SF Y VN   GYIDYE+  + A   +P+I++CG S+YPRE D+ +FR+IAD+ GA+L+ D+AH++GL+ A E A PF +C +V+STTHK+L             + PR  G+ L + +     +   +I+ A+ P  QGGP  + IAA A+  K+   P
Sbjct:   98 ANNAVYHALLKPYDKILGMDLSCGGHLTHG------AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVAGEHAHPFPHCHVVSSTTHKTL-------------RGPR-GGLILTNDE-----EIAAKIDKAIFPGTQGGPLMHAIAAKAVGFKENLKP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_AGRRK (Serine hydroxymethyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.052e-35
Identity = 86/205 (41.95%), Postives = 115/205 (56.10%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D E ++ KA + +PK++I GG++Y R WD+ RFR+IAD  GA LM DMAHI+GL+A  +  SPF +C + T+TTHKSL             + PR   I  N      + D  ++ N AV P LQGGP  + IAA A+AL +   P
Sbjct:  108 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVREGDNLLDMEAVQRKAEETKPKLIIAGGTAYSRIWDWKRFREIADSVGAYLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSL-------------RGPRGGMILTN------DEDLAKKFNSAVFPGLQGGPLMHVIAAKAVALGEALQP 287          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROMM (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.598e-35
Identity = 86/206 (41.75%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F+   Y V   +  +D E + + A+  RP+++ICG S+YPR  D+  FR IAD+ GA L+ DMAHI+GL+AA    SP  +CD+VT+TTHK+L             + PR  G+ L     C + DF  + + AV P  QGGP  + IAA A+AL +   P
Sbjct:  106 ANFAVFLALLQPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFKVVHYGVERDSQQLDMEAVRQLALKERPQLIICGYSAYPRTIDFAAFRSIADEVGAYLLADMAHIAGLVAAGVHPSPIAHCDVVTTTTHKTL-------------RGPR-GGLIL-----CRDADFGRKFDKAVFPGSQGGPLEHVIAAKAVALGEALQP 286          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PROM1 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain NATL1A) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.598e-35
Identity = 81/206 (39.32%), Postives = 127/206 (61.65%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F++  Y+V+ +T  +D + + +KA++ +PK++ICG S+YPR+ D+  FR IAD+  A L+ D+AHI+GL+A+    SP  YCD+VT+TTHK+L             + PR  G+ L+  +     +  ++++ AV P  QGGP  + IAA A+A ++ + P
Sbjct:   93 ANFAVFLSLLKPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFKTCHYEVDKKTEMLDMDAIRKKAIENQPKLIICGFSAYPRKIDFKAFRSIADEVNAYLLADIAHIAGLVASGLHPSPIPYCDVVTTTTHKTL-------------RGPR-GGLILSKDE-----EIGKKLDKAVFPGTQGGPLEHVIAAKAVAFQEASAP 273          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELPG (Serine hydroxymethyltransferase OS=Helicobacter pylori (strain G27) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.598e-35
Identity = 86/206 (41.75%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D+I+G+D   GGHL+HG       KVS     ++SF Y VN   GYIDYE+  + A   +P+I++CG S+YPRE D+ +FR+IAD+ GA+L+ D+AH++GL+   E A PF +C +V+STTHK+L             + PR  GI L + +     +   +I+ A+ P  QGGP  + IAA A+  K+   P
Sbjct:   98 ANNAVYHALLKPYDKILGMDLSCGGHLTHG------AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTNEHAHPFPHCHVVSSTTHKTL-------------RGPR-GGIILTNDE-----EIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLKP 277          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_LEGPA2.268e-3541.26Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_PROMT2.962e-3539.81Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM42.962e-3541.26Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA1_AGRT52.962e-3541.46Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA_METCA5.052e-3541.26Serine hydroxymethyltransferase OS=Methylococcus c... [more]
GLYA_HELPS5.052e-3541.75Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_AGRRK5.052e-3541.95Serine hydroxymethyltransferase OS=Agrobacterium r... [more]
GLYA_PROMM6.598e-3541.75Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM16.598e-3539.32Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_HELPG6.598e-3541.75Serine hydroxymethyltransferase OS=Helicobacter py... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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