CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CAMC5 (Serine hydroxymethyltransferase OS=Campylobacter curvus (strain 525.92) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.598e-35
Identity = 84/206 (40.78%), Postives = 124/206 (60.19%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  LL PGD+I+G+D   GGHL+HG       KVS++   +ESF Y V    G I+YE++ + A   +PK+++CG S+Y RE ++ +FR IAD+ GA+L  D+AHI+GL+ A E  +PF +CD+V+STTHK+L             + PR   I  N      N ++ ++IN ++ P +QGGP  + IAA A+  K   +P
Sbjct:   96 ANQGVYGALLNPGDKILGMDLSHGGHLTHG------AKVSSSGKIYESFFYGVELD-GRINYERILDIAKIVKPKMIVCGASAYTREIEFDKFRAIADEVGALLFADVAHIAGLVVAGEHQNPFPHCDVVSSTTHKTL-------------RGPRGGIIMTN------NEEYAKKINASIFPGIQGGPLVHVIAAKAVGFKHNLSP 275          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEF5 (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.598e-35
Identity = 82/206 (39.81%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  LL  GD I+G+    GGHL+HG       KVS++   + +  Y ++ +TG IDY+++E  A++++PK+++ G S+Y +  D+ RFRQIADK GA+L  DMAH++GL+AA    +P  Y D+VT+TTHK+L             + PR  G+ L      +N + E+++N AV P  QGGP  + IAA A+  K+   P
Sbjct:  101 ANSEVYLALLQAGDTILGMSLAHGGHLTHG------AKVSSSGKLYNAVQYGIDTRTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTL-------------RGPR-GGLIL----AKANEEIEKKLNAAVFPGAQGGPLMHVIAAKAVCFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 82/205 (40.00%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN A Y  L+ PGD ++G+D   GGHL+HG       KV+ +   +    Y V   TGYIDY+++E  A  ++PK+++ G S+YPR  D+ RFR+IADK GA LM DMAHI+GL+AA    +P  Y D+VT+TTHK+L             + PR   I           ++ + I+ A+ P  QGGP  + IAA A+  K+  T
Sbjct:   99 ANMAAYFALIKPGDTVLGMDLAHGGHLTHG------SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTL-------------RGPRGGAI-------LCKEEYAKAIDKALFPGTQGGPLMHIIAAKAVCFKEALT 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 82/205 (40.00%), Postives = 116/205 (56.59%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVAT 616
            AN A Y  L+ PGD ++G+D   GGHL+HG       KV+ +   +    Y V   TGYIDY+++E  A  ++PK+++ G S+YPR  D+ RFR+IADK GA LM DMAHI+GL+AA    +P  Y D+VT+TTHK+L             + PR   I           ++ + I+ A+ P  QGGP  + IAA A+  K+  T
Sbjct:   99 ANMAAYFALIKPGDTVLGMDLAHGGHLTHG------SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTL-------------RGPRGGAI-------LCKEEYAKAIDKALFPGTQGGPLMHIIAAKAVCFKEALT 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PEDPA (Serine hydroxymethyltransferase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 83/206 (40.29%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y   + PGD+I+G+D  +GGHL+HG       KVS +  F++S  Y V+PQT  +DY+++   A+  +P+I++ G S+Y R  D+ +FR+IAD+ GA LM DMAHI+GL+AA    SP    D+VT+TTHK+L             + PR        G   S   + +++NFAV P  QGGP  + IAA A+A  +   P
Sbjct:   96 ANAAAYAAFIKPGDKILGMDLNAGGHLTHG------AKVSFSGTFYQSVSYGVDPQTEKLDYDEIRRIALKEQPQIIVAGASAYSRFIDWNKFREIADEVGAYLMVDMAHIAGLVAAGLHPSPVGIADVVTTTTHKTL-------------RGPR-------GGMILSQEKYAKQLNFAVFPQNQGGPLEHVIAAKAVAFGEALQP 275          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_EHRCJ (Serine hydroxymethyltransferase OS=Ehrlichia canis (strain Jake) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 84/209 (40.19%), Postives = 121/209 (57.89%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASI---FFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  V+  LL PGD ++GL    GGHL+HG         SA SI   +F +  Y+V+  TG +D +++E+  ++++P +LI G S+YPR  D+ RFR+IADK GA L+ D+AH +GLIAA E  SPF+Y  +VTSTTHK+L             + PR   I  N+       D  ++I  ++ P +QGGP  + IAA A+A  +   P
Sbjct:  103 ANQGVFAALLKPGDTVVGLSLDCGGHLTHG---------SAPSISGKWFNAVQYQVDRNTGLLDMDEIEKLVLEHKPTLLIAGSSAYPRTIDFKRFREIADKVGAYLLADIAHYAGLIAAGEFPSPFEYAHVVTSTTHKTL-------------RGPRGAVIMTNY------EDIHKKIQSSIFPGMQGGPLMHVIAAKAVAFGEALKP 283          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 88/206 (42.72%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN A Y   L PGD IMG+    GGHL+HG       K++ +  +F   PY V  +TG IDY+++   A ++RPK+++ G S+YPRE D+ R R IAD  GA+LM DMAHI+GLIAA    SP  Y D+VT+TTHK+L             + PR  G+ L     C   ++   I+ AV P +QGGP  + IAA A+AL +   P
Sbjct:  100 ANMAAYFAFLEPGDTIMGMRLAHGGHLTHG------AKINFSGRYFRYVPYGVEEETGRIDYDRMHAIAREHRPKLIVGGASAYPRELDFARMRAIADDVGALLMIDMAHIAGLIAAGLHMSPVPYADVVTTTTHKTL-------------RGPR-GGMIL-----CPE-EYAAAIDKAVFPGIQGGPLMHVIAAKAVALGEAQRP 279          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CYAA5 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 85/206 (41.26%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F+   Y V+P T  +DY+ + E A   +PK+LICG S+YPR  ++ +FR IAD+ GA LM D+AHI+GL+A+    +P  YCD+VT+TTHK+L             + PR   I  N      N +  ++ + AV P  QGGP    IAA A+A  +   P
Sbjct:  102 ANFAVFLALLNPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFKVSHYGVSPDTERLDYDSILELAKKEKPKLLICGYSAYPRIIEFDKFRAIADEVGAYLMADIAHIAGLVASGHHPNPLPYCDVVTTTTHKTL-------------RGPRGGLIMTN------NPELGKQFDKAVFPGTQGGPLEQVIAAKAVAFGEALKP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CAMC1 (Serine hydroxymethyltransferase OS=Campylobacter concisus (strain 13826) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 83/206 (40.29%), Postives = 124/206 (60.19%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  VY  LL PGD+I+G+D   GGHL+HG       KVS++   +ESF Y V    G I+Y+++ + A   +PK+++CG S+Y RE ++ +FR+IAD  GA+L  D+AHI+GL+ A E  +PF +CD+V+STTHK+L             + PR   I  N      N ++ ++IN ++ P +QGGP  + IAA A+  K   +P
Sbjct:   96 ANQGVYGALLNPGDKILGMDLSHGGHLTHG------AKVSSSGKMYESFFYGVELD-GRINYDRVMDIAKIVKPKMIVCGASAYTREIEFKKFREIADAVGAILFADVAHIAGLVVAGEHQNPFPHCDVVSSTTHKTL-------------RGPRGGIIMTN------NEEYAKKINSSIFPGIQGGPLVHVIAAKAVGFKHNLSP 275          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_RHIEC (Serine hydroxymethyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 84/205 (40.98%), Postives = 117/205 (57.07%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++  KA +++PK++I GG++Y R WD+ RFR+IAD  GA LM DMAHI+GL+A  +  SPF +C + T+TTHKSL             + PR  G+ L + +     D  ++ N AV P LQGGP  + IAA A+A  +   P
Sbjct:  108 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVREGDNLLDMDEVARKAEEHKPKVIIAGGTAYSRIWDWKRFREIADSVGAYLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSL-------------RGPR-GGVILTNEE-----DLAKKFNSAVFPGLQGGPLMHIIAAKAVAFGEALQP 287          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CAMC56.598e-3540.78Serine hydroxymethyltransferase OS=Campylobacter c... [more]
GLYA2_PSEF56.598e-3539.81Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA_THEPX8.617e-3540.00Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEP38.617e-3540.00Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_PEDPA8.617e-3540.29Serine hydroxymethyltransferase OS=Pediococcus pen... [more]
GLYA_EHRCJ8.617e-3540.19Serine hydroxymethyltransferase OS=Ehrlichia canis... [more]
GLYA_DESAP8.617e-3542.72Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_CYAA58.617e-3541.26Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_CAMC18.617e-3540.29Serine hydroxymethyltransferase OS=Campylobacter c... [more]
GLYA_RHIEC1.125e-3440.98Serine hydroxymethyltransferase OS=Rhizobium etli ... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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