CX309079

Overview
NameCX309079
Unique NameCX309079
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12979 contig Ccv1_Contig12979:927..1546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_HELPY (Serine hydroxymethyltransferase OS=Helicobacter pylori GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 86/206 (41.75%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL P D+I+G+D   GGHL+HG       KVS     ++SF Y VN   GYIDYE+  + A   +P+I++CG S+YPRE D+ +FR+IAD+ GA+L+ D+AH++GL+   E A PF +C +V+STTHK+L             + PR  GI L + +     +   +I+ A+ P  QGGP  + IAA A+  K+   P
Sbjct:   98 ANNAVYHALLKPYDKILGMDLSCGGHLTHG------AKVSLTGKHYQSFSYGVNLD-GYIDYEEALKIAQSVKPEIIVCGFSAYPREIDFKKFREIADEVGALLLGDIAHVAGLVVTGEHAHPFPHCHVVSSTTHKTL-------------RGPR-GGIILTNDE-----EIAAKIDKAIFPGTQGGPLMHVIAAKAVGFKENLKP 277          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  +L PGD ++G++   GGHL+HG        V+ +   F   PY V+ +T  IDYE+ E  A++++PK+++ G S+YPR  D+  FR+IADK GAV+M DMAHI+GL+AA    SP  Y + VT+TTHK+L             + PR   I           D+ + +N  + P +QGGP  + IAA A+A K+  TP
Sbjct:   97 ANMAVYFSVLKPGDTVLGMNLAHGGHLTHG------SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTL-------------RGPRGGMIMCRE-------DWAKTLNSNIFPGIQGGPLMHVIAAKAVAFKEALTP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP4 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 85/206 (41.26%), Postives = 119/206 (57.77%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            ANFAV+  LL PGD IMG+D   GGHL+HG        V+ +  +F    Y V+P T  +DYEK+ + A  +RPK++ICG S+YPR   + +FR IAD+ GA L+ DMAHI+GL+A     SP   CD+VT+TTHK+L             + PR  G+ L       + +  ++++ AV P  QGGP  + IAA A+A  +   P
Sbjct:  102 ANFAVFLALLQPGDTIMGMDLSHGGHLTHG------SPVNVSGKWFRVVHYGVDPVTEQLDYEKIRQLAHQHRPKLIICGYSAYPRIIQFDQFRAIADEVGAYLLADMAHIAGLVATGHHPSPIPVCDVVTTTTHKTL-------------RGPR-GGLILTR-----DPELGKKLDKAVFPGNQGGPLEHVIAAKAVAFGEALRP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_AGRVS (Serine hydroxymethyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 84/205 (40.98%), Postives = 114/205 (55.61%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D + + E A  ++PK++I GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SPF +C + T+TTHKSL             + PR   I  N      + D  ++ N AV P LQGGP  + IAA A+A  +   P
Sbjct:  106 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVRQDDNLLDMDAVAESARKHKPKLIIAGGTAYSRIWDWKRFREIADEVGAYLMVDMAHIAGLVAGNQHPSPFPHCHVATTTTHKSL-------------RGPRGGMILTN------DEDLAKKFNSAVFPGLQGGPLMHVIAAKAVAFGEALQP 285          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_ACHLI (Serine hydroxymethyltransferase OS=Acholeplasma laidlawii (strain PG-8A) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 87/206 (42.23%), Postives = 123/206 (59.71%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGDR++G+D  +GGHL+HGY      K+S +  ++E+  Y V+     IDYE++ + A++ +PK++I G S+YPR  D+ +FR+IAD  GA L  DMAHI+GL+A     SP  Y D+VTSTTHK+L             + PR  GI L      ++    ++I+ AV P  QGGP  + IAA A+A K+   P
Sbjct:   96 ANAAVYQALLSPGDRVLGMDLNAGGHLTHGY------KLSFSGHYYEAHAYGVSRFDERIDYEEVLKIAIEVKPKMIIAGASAYPRVIDFKKFREIADTVGAYLFVDMAHIAGLVACGLHPSPLPYADVVTSTTHKTL-------------RGPR-GGIILT-----NDASIAKKIDRAVFPGQQGGPLMHIIAAKAVAFKEALDP 276          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA1_RHIME (Serine hydroxymethyltransferase 1 OS=Rhizobium meliloti GN=glyA1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 85/205 (41.46%), Postives = 117/205 (57.07%), Query Frame = 2
Query:    5 NFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            N AV+  LL PGD  MGLD  SGGHL+HG        V+ +  +F    Y V      +D +++  KA + +PK++I GG++Y R WD+ RFR+IAD+ GA LM DMAHI+GL+A  +  SPF +C + T+TTHKSL             + PR   I  N      + +  ++IN AV P LQGGP  + IAA A+AL +   P
Sbjct:  108 NQAVFLALLQPGDTFMGLDLNSGGHLTHG------SPVNMSGKWFNVVSYGVREDDHLLDMDEVARKAREQKPKLIIAGGTAYSRIWDWKRFREIADEVGAWLMVDMAHIAGLVAGGQHPSPFPHCHVATTTTHKSL-------------RGPRGGMILTN------DEEIAKKINSAVFPGLQGGPLMHVIAAKAVALGEALQP 287          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_PELLD (Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 83/206 (40.29%), Postives = 117/206 (56.80%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AV   +L PGDRIMGLD   GGHL+HG        V+ +   F++  Y V+ +TG ID  K+EE A+D++P+++ICG S+Y + +D+  FR+IADK GA LM D+AH +GLIAA  L  P  +C  VT+TTHK+L              +    GI +   +G       E ++  V P +QGGP  + IA  A+A  +   P
Sbjct:   99 ANMAVLFSVLKPGDRIMGLDLSHGGHLTHG------SSVNFSGQMFDARSYGVDRETGIIDMNKVEEMALDFKPRLIICGASAYSQGFDFKAFREIADKVGAFLMADIAHPAGLIAAGLLTDPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFE-NPMGITIKTKNGPRVKMMSEVMDAEVMPGIQGGPLMHIIAGKAVAFGEALRP 297          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 84/206 (40.78%), Postives = 114/206 (55.34%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN  V   +L PGDRIMGLD   GGHL+HG       KV+ +   FE+  Y V+ +TG ID  K+EE A++ RPK++ICG S+Y + +D+  FR +ADK GA LM D+AH +GLIAA  L  P  +C  VT+TTHK+L              +    GI +    G       E I+  + P +QGGP  + IAA  +A  +   P
Sbjct:   99 ANMGVLFAVLKPGDRIMGLDLSHGGHLTHG------SKVNFSGQLFEAHSYGVDRETGCIDMNKVEEMALEVRPKLIICGASAYSQGFDFKAFRDVADKVGAFLMADIAHPAGLIAAGLLNDPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFE-NPLGITVKTKKGSRTKMMSEVIDAEIMPGIQGGPLMHIIAAKGVAFGEALQP 297          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEPF (Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 82/206 (39.81%), Postives = 122/206 (59.22%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL  GD I+G+    GGHL+HG       KVS++   + +  Y ++ +TG IDY+++E  A++ +PK+++ G S+Y +  D+ RFRQIADK GA+L  DMAH++GL+AA    +P  Y D+VT+TTHK+L             + PR  G+ L      +N + E+++N AV P  QGGP  + IA  A+  K+   P
Sbjct:  101 ANSAVYLALLQAGDTILGMSLAHGGHLTHG------AKVSSSGKLYNAVQYGIDTKTGLIDYDEVERLAVECKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTL-------------RGPR-GGLIL----AKANEEIEKKLNAAVFPGAQGGPLMHVIAGKAVCFKEALEP 282          
BLAST of CX309079 vs. ExPASy Swiss-Prot
Match: GLYA2_SALTI (Serine hydroxymethyltransferase 2 OS=Salmonella typhi GN=glyA2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.470e-34
Identity = 83/206 (40.29%), Postives = 120/206 (58.25%), Query Frame = 2
Query:    2 ANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAHISGLIAAKELASPFDYCDIVTSTTHKSLXXXXXXXXXXXXXKKPRKQGIPLNHGDGCSNYDFEERINFAVHPSLQGGPHNNHIAALAIALKQVATP 619
            AN AVY  LL PGD+I+G+    GGHL+HG        V+ +  +F +F Y V+  +G ID +++E  A   RP+++I GGS+YPR +D+ RFR+IAD  GA+L+ DMAH +GL+A     SP  Y D++T+TTHK+L             + PR   I  N      +    ++I+ A+ P LQGGP  + IAA A+AL +   P
Sbjct:  100 ANQAVYLALLKPGDKILGMSLQCGGHLTHG------SPVNQSGKWFNAFHYGVDAHSGLIDMDEVETIAKRERPRLIIAGGSAYPRHYDFARFRRIADAVGAMLLVDMAHFAGLVAGGCFPSPLAYADVITATTHKTL-------------RGPRGGMILTN------DARLAKKIDSAIFPGLQGGPLMHVIAAKAVALGEALQP 280          
The following BLAST results are available for this feature:
BLAST of CX309079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_HELPY1.125e-3441.75Serine hydroxymethyltransferase OS=Helicobacter py... [more]
GLYA_GEOBB1.125e-3440.29Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_CYAP41.125e-3441.26Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_AGRVS1.125e-3440.98Serine hydroxymethyltransferase OS=Agrobacterium v... [more]
GLYA_ACHLI1.125e-3442.23Serine hydroxymethyltransferase OS=Acholeplasma la... [more]
GLYA1_RHIME1.125e-3441.46Serine hydroxymethyltransferase 1 OS=Rhizobium mel... [more]
GLYA_PELLD1.470e-3440.29Serine hydroxymethyltransferase OS=Pelodictyon lut... [more]
GLYA_CHLPB1.470e-3440.78Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA3_PSEPF1.470e-3439.81Serine hydroxymethyltransferase 3 OS=Pseudomonas f... [more]
GLYA2_SALTI1.470e-3440.29Serine hydroxymethyltransferase 2 OS=Salmonella ty... [more]

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Properties
Property NameValue
Genbank descriptionC21008C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21008C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309079 ID=CX309079; Name=CX309079; organism=Citrus clementina; type=EST; length=620bp
TGCAAATTTCGCGGTCTATACGGGTCTTTTGTTGCCTGGGGATAGAATTA
TGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACGGCTACCATACA
CCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTTGAGAGTTTTCC
TTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGAAAAGCTGGAGG
AGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTGGTGGGAGTTCA
TATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATTGCAGATAAGTG
TGGTGCAGTTTTGATGTGTGATATGGCTCATATTAGTGGGCTCATTGCTG
CTAAGGAATTGGCCAGTCCATTTGATTATTGTGATATCGTGACTTCAACA
ACTCACAAAAGTTTACGAGGTCCTAGGGGAGGGATCATTTTCTTTAGGAG
AGGCAAAAAACCAAGGAAGCAAGGCATACCCCTCAATCATGGTGATGGTT
GTAGTAATTATGATTTCGAGGAGAGGATAAACTTTGCTGTCCATCCATCA
CTACAAGGGGGTCCTCACAATAATCACATTGCTGCTCTTGCCATAGCATT
GAAACAAGTGGCAACTCCTG
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