CX309092

Overview
NameCX309092
Unique NameCX309092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length318
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1683 contig Ccv1_Contig1683:265..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.202e-45
Identity = 82/106 (77.36%), Postives = 91/106 (85.85%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FGKIDM++KLV GNSAGTVTAYYL S G TWDEIDFEFL N++G PY LHTNVFT GKG+RE QF+LWFDPTADFHTY+VLWNP  I+F VDG PIR FKN E+NG
Sbjct:   68 FGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANG 173          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.017e-44
Identity = 82/106 (77.36%), Postives = 88/106 (83.02%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FGKIDM+LKLV GNSAGTVTAYYL S G+ WDEIDFEFL N +G PYT+HTNVFT GKGDRE QF LWFDPTADFHTY+V WNP  I+F VDG PIR FKN E NG
Sbjct:   72 FGKIDMKLKLVAGNSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNG 177          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.125e-43
Identity = 80/106 (75.47%), Postives = 89/106 (83.96%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG+IDMQLKLV GNSAGTVTAYYL S G T DEIDFEFL NLSGDPY LHTN+FT GKG+REQQF+LWFDPT +FHTYS++W PQ I+F VD +PIR FKN E  G
Sbjct:   74 FGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLG 179          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.063e-41
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG+IDMQLKLV GNSAGTVTAYYL S G+T DEIDFEFL N +G PY LHTNVF  GKGDREQQF+LWFDPT +FHTYS++W PQ I+F VD  PIR F N E  G
Sbjct:   70 FGRIDMQLKLVAGNSAGTVTAYYLSSQGATHDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLG 175          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.387e-40
Identity = 76/106 (71.70%), Postives = 84/106 (79.25%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG+IDMQLKLV GNSAGTVTAYYL S G T DEIDFEFL N +G PY LHTNVF  GKG+REQQF+LWFDPT +FHTYS++W PQ I+F VD  PIR F N E  G
Sbjct:   69 FGRIDMQLKLVAGNSAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLG 174          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.170e-38
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG ++M +KLVPGNSAGTV AYYL S GST DEIDFEFL N +G PYT+HTN++  GKG+REQQF  WF+PT  FH Y++ WNP  +V++VDG+PIR F+N ES G
Sbjct:   69 FGSVEMLIKLVPGNSAGTVAAYYLSSTGSTHDEIDFEFLGNATGQPYTIHTNLYAQGKGNREQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEG 174          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.280e-35
Identity = 69/106 (65.09%), Postives = 78/106 (73.58%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M +KLVPG+SAGTVTA+YL S  +  DEIDFEFL N +G PY L TNVFT GKGDREQ+ +LWFDPT  +H YSVLWN  +IVFYVD  PIR FKN    G
Sbjct:   73 FGHFSMYIKLVPGDSAGTVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLG 178          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.628e-34
Identity = 63/105 (60.00%), Postives = 87/105 (82.86%), Query Frame = -1
Query:    7 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTW-DEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLES 318
            FG++ M++KL+PG+SAGTVTA+Y+ S  +T  DE+DFEFL N SG PY++ TN+F +GKGDREQ+ +LWFDP+ D+HTY++LW+ + IVFYVD  PIRE+KN E+
Sbjct:   77 FGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEA 181          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.126e-34
Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M +K+VPG+SAGTVTA+YL S  +  DEIDFEFL N +G PY L TNVFT GKGDREQ+ +LWFDPT ++H YS+LWN  +IVF+VD  PIR FKN +  G
Sbjct:   75 FGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLG 180          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.627e-34
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = -1
Query:    1 FGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNG 318
            FG   M +KLV G+SAGTVTA+YL S  S  DEIDFEFL N +G PY L TNVF+ GKGDREQ+ +LWFDPT D+H+YSVLWN   I F+VD +PIR FKN +  G
Sbjct:   74 FGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLG 179          
The following BLAST results are available for this feature:
BLAST of CX309092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XTH13_ARATH1.202e-4577.36Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH1.017e-4477.36Xyloglucan endotransglucosylase/hydrolase protein ... [more]
BRU1_SOYBN1.125e-4375.47Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH15_ARATH3.063e-4172.64Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH3.387e-4071.70Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH3.170e-3864.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN3.280e-3565.09Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH6_ARATH1.628e-3460.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN2.126e-3462.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT3.627e-3463.21Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC21008D11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309092 ID=CX309092; Name=CX309092; organism=Citrus clementina; type=EST; length=318bp
GCCGTTTGATTCCAAGTTCTTGAACTCTCTAATTGGCGAGCCATCAACAT
AGAAGACAATACGTTGGGGATTCCAGAGAACGGAATAGGTGTGAAAGTCA
GCAGTGGGGTCAAACCAGAGGTGGAATTGTTGCTCTCTGTCACCTTTGCC
ATTTGTGAACACATTAGTATGAAGAGTATAAGGATCACCACTTAAATTCT
CCAAGAATTCGAAGTCTATCTCATCCCATGTTGATCCTGGTGATTTTAAG
TAGTAGGCGGTGACTGTGCCGGCAGAATTGCCAGGGACAAGCTTGAGTTG
CATGTCGATTTTGCCAAA
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