CX309092

Overview
NameCX309092
Unique NameCX309092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length318
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1683 contig Ccv1_Contig1683:265..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.341e-19
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = -1
Query:    1 LKLVPGNSAGTVTAYYLKSPGSTW----DEIDFEFLENLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIRE-FKNLESNG 297
            +KL    +AG V A+Y  S G  +    DE+D EFL NL G P+   TN++ NG  +R  E+++ LWFDP+ +FH YS+LW P +I+F+VD  PIRE  +  E NG
Sbjct:   89 IKLPGAYTAGIVVAFYT-SNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNG 193          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.790e-18
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = -1
Query:   16 FGKIDMQLKLVPGNSAGTVTAYYLKSPGS---TWDEIDFEFLENLSGDPYTLHTNVFTNG--KGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKN 318
            +G    +LKL  G ++G V A+YL +  +   + DEID E L     D +T+ TNV+ NG  +  RE++F+ WFDPT  FH Y+++WN    VF VD  P+R+F N
Sbjct:   83 YGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPN 188          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = -1
Query:   40 QLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDG 300
            ++ + P  + G V++++     S G+ WDEID EFL     D   +  N +TNG G  E+  +L FD +  FHTY+  W P  I +YVDG
Sbjct:  100 EVSMKPAKNTGIVSSFFTYTGPSHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDG 186          
BLAST of CX309092 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.358e-11
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = -1
Query:   31 QLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLENLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPI 300
            Q+ + P  + G V++++     S G+ WDEID EFL     D   +  N +TNG+G  E   +L FD +  FHTY   W    I +YVDG+ +
Sbjct:  105 QVNMKPIKNPGVVSSFFTYTGPSDGTKWDEIDIEFL---GYDTTKVQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAV 194          
The following BLAST results are available for this feature:
BLAST of CX309092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XTH29_ARATH7.341e-1945.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH2.790e-1841.51Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_PAEPO5.634e-1137.78Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
GUB_ORPSP7.358e-1136.56Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]

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Properties
Property NameValue
Genbank descriptionC21008D11Rv AbsLeaSub1 Citrus clementina cDNA clone C21008D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX309092 ID=CX309092; Name=CX309092; organism=Citrus clementina; type=EST; length=318bp
GCCGTTTGATTCCAAGTTCTTGAACTCTCTAATTGGCGAGCCATCAACAT
AGAAGACAATACGTTGGGGATTCCAGAGAACGGAATAGGTGTGAAAGTCA
GCAGTGGGGTCAAACCAGAGGTGGAATTGTTGCTCTCTGTCACCTTTGCC
ATTTGTGAACACATTAGTATGAAGAGTATAAGGATCACCACTTAAATTCT
CCAAGAATTCGAAGTCTATCTCATCCCATGTTGATCCTGGTGATTTTAAG
TAGTAGGCGGTGACTGTGCCGGCAGAATTGCCAGGGACAAGCTTGAGTTG
CATGTCGATTTTGCCAAA
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