DY257712

Overview
NameDY257712
Unique NameDY257712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1181
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9885 contig Ccv1_Contig9885:4..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257712 vs. ExPASy Swiss-Prot
Match: VDAC2_MELGA (Voltage-dependent anion-selective channel protein 2 OS=Meleagris gallopavo GN=VDAC2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.817e-13
Identity = 68/239 (28.45%), Postives = 104/239 (43.51%), Query Frame = 1
Query:  100 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCSAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNN 786
            P  Y+++GK ARD+  K Y     K  V T +++GV  T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F         ++SGK++  Y+ E   +   + F  A P               G  ++FD+A    T+ +  + Y   D      +ND G     S Y  VS    TAV   L  +  SN     I  ++ LD   S+ A+VNN
Sbjct:    3 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSASGVEFTTSGSSNTDTGKVNGSLETKYKWAEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECLNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTNVND-GSEFGGSIYQKVSDNLETAV--NLAWTAGSNSTRFGIAAKYKLDSTASISAKVNN 238          
BLAST of DY257712 vs. ExPASy Swiss-Prot
Match: VDAC1_MOUSE (Voltage-dependent anion-selective channel protein 1 OS=Mus musculus GN=Vdac1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 3.788e-11
Identity = 71/255 (27.84%), Postives = 112/255 (43.92%), Query Frame = 1
Query:   55 SAFPFHFLWRIMVKGPGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCSAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 786
            S F    LW+ M   P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E    + S + K +     +T   K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+  +   + F  A P               G  ++F+T+    T+ +  + Y   +      +ND G     S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN
Sbjct:    3 SFFLVLLLWQNMAVPP-TYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQVDPDACFSAKVNN 252          
BLAST of DY257712 vs. ExPASy Swiss-Prot
Match: VDAC1_PIG (Voltage-dependent anion-selective channel protein 1 OS=Sus scrofa GN=VDAC1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 6.462e-11
Identity = 67/240 (27.92%), Postives = 105/240 (43.75%), Query Frame = 1
Query:  100 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCSAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 786
            P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E      S + K +     +T   K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+  +   + F  A P               G  ++F+TA    T+ +  + Y   +      +ND G     S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN
Sbjct:    4 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNN 239          
BLAST of DY257712 vs. ExPASy Swiss-Prot
Match: VDAC1_RABIT (Voltage-dependent anion-selective channel protein 1 OS=Oryctolagus cuniculus GN=VDAC1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 8.440e-11
Identity = 67/240 (27.92%), Postives = 105/240 (43.75%), Query Frame = 1
Query:  100 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCSAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 786
            P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E      S + K +     +T   K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+  +   + F  A P               G  ++F+TA    T+ +  + Y   +      +ND G     S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN
Sbjct:    4 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNN 239          
BLAST of DY257712 vs. ExPASy Swiss-Prot
Match: VDAC1_BOVIN (Voltage-dependent anion-selective channel protein 1 OS=Bos taurus GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 8.440e-11
Identity = 67/240 (27.92%), Postives = 105/240 (43.75%), Query Frame = 1
Query:  100 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCSAGLSYTHIDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNN 786
            P  Y+++GK ARD+  K Y     K  + T +  G+  TSSG    E      S + K +     +T   K +T++ L T ITV D+ A GLK  F S   P+  +++ K++  Y+ E+  +   + F  A P               G  ++F+TA    T+ +  + Y   +      +ND G     S Y  V+    TAV    T   + N NT   I  ++ +DP     A+VNN
Sbjct:    4 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNN 239          
The following BLAST results are available for this feature:
BLAST of DY257712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VDAC2_MELGA1.817e-1328.45Voltage-dependent anion-selective channel protein ... [more]
VDAC1_MOUSE3.788e-1127.84Voltage-dependent anion-selective channel protein ... [more]
VDAC1_PIG6.462e-1127.92Voltage-dependent anion-selective channel protein ... [more]
VDAC1_RABIT8.440e-1127.92Voltage-dependent anion-selective channel protein ... [more]
VDAC1_BOVIN8.440e-1127.92Voltage-dependent anion-selective channel protein ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AB05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257712 ID=DY257712; Name=DY257712; organism=Citrus clementina; type=EST; length=1181bp
GGGGTTTTGATTTCATAATCTTCCTCCAGCTGAAATAATCAAAACTGATA
TTTCTCAGCGTTTCCTTTCCATTTTCTCTGGAGAATCATGGTGAAAGGCC
CCGGGCTCTACTCTGAAATCGGCAAGAAAGCCCGAGATCTTCTCTACAAG
GACTACCAGAGCGACCACAAGTTCACTGTCACTACTTACACGTCAGCTGG
AGTCGCGATAACTTCGAGTGGTGTTAAGAAAGGTGAGCTTTTTTTGGCTG
ATGTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGATGTTAAAGTT
GATACTAACTCTAATCTTTTTACAACCATCACTGTCGATGAGCCTGCTCC
TGGACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAGAGATCTGGCA
AGGTGGAACTCCAATATCAGCATGAATATGCTGGAATAAGCACTGGCATT
GGATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTGGTTGGAAACAA
TTCTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCCACTGGCAACT
TCACCAAGTGCAGTGCGGGGCTGAGCTATACACATATTGACCTCATTGCT
TCCCTGACATTGAATGACAAAGGTGACACCCTTAATGCTTCCTACTACCA
CATTGTAAGCCCACTGACCAATACCGCTGTTGGGGCGGAGCTGACCCATA
GCTTTTCAAGCAACGAGAACACTCTGACAATCGGAACTCAACATGCTCTT
GATCCTTTGACCTCGGTGAAAGCCCGTGTGAACAACTATGGCAGGGCAAG
TGCTCTTATCCAGCACGAGTGGCGTCCCAAATCTTTTTTACTATCTCAGG
AGAAGGAAAACCCCGGGCCATTGAAAAAAGGGAAAAAATTGGGCTGGGGT
TACCTCCCAAGCCAAAAGCCAAACAATTAACCTTGGGCGTCGGGGGGGAA
AGGAAAAAAAAATGTTTTTAAATGGGGGGAATAAATTAATTGTTTAAAAA
AAATGAGGGGAAAACCCAAATTTTCTTTCTTTTTTTTTTCCCCTTTCCCA
AAAACTTTGGAATTCCCCCCCGGGGGGGGTTTTGTGGGTTTCCAAAAGTG
TGGTGGCCCCGGGGGTTGAAAAAAAAATTTTCCGGCTTGAATTGCCCAAA
AACCCAAATTTGGGGTGTTTTTCTTCTTTTT
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