DY257714

Overview
NameDY257714
Unique NameDY257714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1343
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.682e-14
Identity = 69/265 (26.04%), Postives = 120/265 (45.28%), Query Frame = 2
Query:  149 PPSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI---LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVF-DITSLQIFTPHELDHLLCGRREL--WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTIVRKHSS 919
            PP+ D S+G   +  +E + L G VM  A+ +  +LDL F  A YK +    L   D      E  + L ++           + T DN E+   L F      +  +        +Y+   L     NV I  +N  E++   V+  ++  I  Q   F +GF +VF +  S+++F   EL+ L+CG  E   ++  +L    K+  G++  S A+    EI+  +    Q+   QFVT + R+P  G++ +  K++++  H S
Sbjct:  599 PPNFDKSKGK--NSQLELYYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFPETSRNLIKML----------NYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPITQSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTIPFKISLLGSHDS 851          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: PUB1_SCHPO (E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe GN=pub1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 9.691e-14
Identity = 59/228 (25.88%), Postives = 104/228 (45.61%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 871
            + YF+ +GRV+  A+   R +D  F  +FYK++L  ++ L D+   DAE+              + L  +  ++    +DL F    +ED C    +       LKP   N+++   N  EY+ LV    ++  I  Q  AF  GF+++     + +F   EL+ L+ G  E+ +     +H  +   Y+     I    E+M E++ +++    QF TG  R+P  G
Sbjct:  500 LNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQKKVTLQDMESMDAEY-------------YRSLVWILDNDITGVLDLTF---SVEDNCFGEVV----TIDLKPNGRNIEVTEENKREYVDLVTVWRIQKRIEEQFNAFHEGFSELIPQELINVFDERELELLIGGISEI-DMEDWKKHTDY-RSYSENDQIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNG 705          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HECW2_HUMAN (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.653e-13
Identity = 65/231 (28.14%), Postives = 105/231 (45.45%), Query Frame = 2
Query:  197 EYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            E+FR  GR++  AL    LLD  F+  FYK +L    DL D+   D EF              Q L+ M  ++  + +DL F     E++    T     +  LKPG  N+ +   N +EYI  +V   ++ G+++Q E+   GF +V D   + +F   EL+ ++ G  E+ + +    + ++  GY      I      +  F  +Q+    QFVTG   +P  G A L
Sbjct: 1305 EWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRILCDLSDLEYLDEEF-------------HQSLQWMKDNDIHDILDLTF--TVNEEVFGQIT-----ERELKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVRGFYEVVDARLVSVFDARELELVIAGTAEI-DLSDWRNNTEYRGGYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASL 1514          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HECW2_MOUSE (E3 ubiquitin-protein ligase HECW2 OS=Mus musculus GN=Hecw2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.683e-13
Identity = 65/231 (28.14%), Postives = 104/231 (45.02%), Query Frame = 2
Query:  197 EYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            E+FR  GR++  AL    LLD  F+  FYK +L    DL D+   D EF              Q L+ M  ++  + +DL F     E++    T     +  LKPG  N+ +   N +EYI  +V   ++ G+++Q E+   GF +V D   + +F   EL+ ++ G  E+ +      + ++  GY      I      +  F  +Q+    QFVTG   +P  G A L
Sbjct: 1311 EWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRILCDLSDLEYLDEEF-------------HQSLQWMKDNDIHDILDLTF--TVNEEVFGQIT-----ERELKPGGANIPVTEKNKKEYIERMVKWRIERGVVQQTESLVRGFYEVVDARLVSVFDARELELVIAGTAEI-DLNDWRNNTEYRGGYHDNHIVIRWFWAAVERFNNEQRLRLLQFVTGTSSIPYEGFASL 1520          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 4.810e-13
Identity = 74/297 (24.92%), Postives = 124/297 (41.75%), Query Frame = 2
Query:  152 PSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLP----GYPDYI-LKPGDENVDINNLEE--YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTIVRKHSSTAPNTPSNGNGAFGISGRMTWPSVMTLGQLPETF 1021
            P+A    G  F++   ++  LGR++ KAL +  L++LPF+  F   +LG   D+               ++H       HL S+  +  +  + L+     +E+L L+FT+     G    + LK G +++ + +     YI LV D  +   I +   AFR G   V  +  L++F   E+  L+ G +       L     +  GY+A  P I     ++  FT +++R   +FVT   R P  G   L P   I               NG   +    T  + M L +LPE +
Sbjct:  804 PAAQMLVGDSFAR---HYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADV---------------DIH-------HLASLDPEVYKNLLFLKSYEDDVEELGLNFTVVNNDLGEAQVVELKFGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCI--------------HNGGSDLERLPTASTCMNLLKLPEFY 1061          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HECW1_HUMAN (E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 4.810e-13
Identity = 67/232 (28.88%), Postives = 103/232 (44.40%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            +E+FR  GR++  AL    LLD  F+  FYK +L    DL D+   D EF              Q L+ M  +N  + +DL F     E++    T     +  LK G  N  +   N +EYI  +V   V+ G+++Q EA   GF +V D   + +F   EL+ ++ G  E+ +      + ++  GY      I      +  F  +Q+    QFVTG   +P  G A L
Sbjct: 1338 LEWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRLPCDLSDLEYLDEEF-------------HQSLQWMKDNNITDILDLTF--TVNEEVFGQVT-----ERELKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALVRGFYEVVDSRLVSVFDARELELVIAGTAEI-DLNDWRNNTEYRGGYHDGHLVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAAL 1548          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: SPKUL_DICDI (Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase OS=Dictyostelium discoideum GN=DDB_G0276527 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 6.282e-13
Identity = 58/226 (25.66%), Postives = 108/226 (47.79%), Query Frame = 2
Query:  203 FRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNL--EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITS-LQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGG 871
            F++LG++  K++ DG+ +   F T+F+K +LG +++L D+  +D +  +  +++ V+            DN EE +   F G                   L  G E++ + +L  EE+I   ++  +      ++EAF++GF  +  + +   +F+P EL  L+CG   L + + L ++ KF  G+   S    +    + E   D+ R F +FVTG   LP  G
Sbjct: 1641 FKILGKIFLKSIIDGKPIPDCFPTSFFKYLLGVKVNLRDLEIYDPQLAQSFKKVLVL------------DNIEEYLSTTFEG-------------------LIEGGESIPVTDLNKEEFIQRNIERVLVGCRQSKLEAFKSGFMSIDSLNAHFALFSPTELQLLMCG-NTLVDSSVLQKNFKF-IGFPDTSSTPKDFRRAVDEMNQDEIRLFLRFVTGMVALPLSG 1833          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HECW1_MOUSE (E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 8.204e-13
Identity = 67/232 (28.88%), Postives = 103/232 (44.40%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            +E+FR  GR++  AL    LLD  F+  FYK +L    DL D+   D EF              Q L+ M  +N  + +DL F     E++    T     +  LK G  N  +   N +EYI  +V   V+ G+++Q EA   GF +V D   + +F   EL+ ++ G  E+ +      + ++  GY      I      +  F  +Q+    QFVTG   +P  G A L
Sbjct: 1336 LEWFRFSGRILGLALIHQYLLDAFFTRPFYKGLLKLPCDLSDLEYLDEEF-------------HQSLQWMKDNNITDILDLTF--TVNEEVFGQVT-----ERELKSGGANTQVTEKNKKEYIERMVKWRVERGVVQQTEALLRGFYEVVDSRLVSVFDARELELVIAGTAEI-DLNDWRNNTEYRGGYHDGHLVIRWFWAAVERFNNEQRLRLLQFVTGTSSVPYEGFAAL 1546          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.072e-12
Identity = 67/251 (26.69%), Postives = 110/251 (43.82%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYP-----DYILKPGDENVDINN--LEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTIVRKHSSTA 925
            +++F  LG ++AKA+ +G L+D+PF+T F   +      L+D+   D E  +     H+I  +                  R++G  I DL L F +         +  L PG +++ + N  +  +I LV +  +   I +Q   F  GF Q+     + +F  HEL  L+ G  +  +   L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R   S +
Sbjct:  758 LQFFHFLGSLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYR-----HLIFLK------------------RYKG-DISDLELYFVILNNEYGERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSAS 984          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.072e-12
Identity = 75/297 (25.25%), Postives = 122/297 (41.08%), Query Frame = 2
Query:  152 PSADASEGGQFSKVIEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLP----GYPDYI-LKPGDENVDIN--NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTIVRKHSSTAPNTPSNGNGAFGISGRMTWPSVMTLGQLPETF 1021
            P+A    G  F++   ++  LGR++ KAL +  L++LPF+  F   +LG   D+               ++H       HL S+  +     + L+     +E+L L+FT+     G    + LK G +++ +   N   YI LV D  +   I     AFR G   V  +  L++F   E+  L+ G +       L     +  GY+A  P I     ++  FT +++R   +FVT   R P  G   L P   I               NG   +    T  + M L +LPE +
Sbjct:  804 PAAQMLVGDSFAR---HYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADV---------------DIH-------HLASLDPEVYRNLLFLKSYEEDVEELGLNFTVVNNDLGEAQVVELKFGGKDIPVTGANRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCI--------------HNGGSDLERLPTASTCMNLLKLPEFY 1061          
The following BLAST results are available for this feature:
BLAST of DY257714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HUL4_YEAST5.682e-1426.04Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
PUB1_SCHPO9.691e-1425.88E3 ubiquitin-protein ligase pub1 OS=Schizosaccharo... [more]
HECW2_HUMAN1.653e-1328.14E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens ... [more]
HECW2_MOUSE3.683e-1328.14E3 ubiquitin-protein ligase HECW2 OS=Mus musculus ... [more]
UBE3C_HUMAN4.810e-1324.92Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
HECW1_HUMAN4.810e-1328.88E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens ... [more]
SPKUL_DICDI6.282e-1325.66Bifunctional serine/threonine-protein kinase/NEDD4... [more]
HECW1_MOUSE8.204e-1328.88E3 ubiquitin-protein ligase HECW1 OS=Mus musculus ... [more]
UPL6_ARATH1.072e-1226.69E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3C_MOUSE1.072e-1225.25Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AC01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257714 ID=DY257714; Name=DY257714; organism=Citrus clementina; type=EST; length=1343bp
GAGAGTCGGACTTGCAATGTGGAGGTCAAATTCCTCATCAGAGAATCCGC
CAATGGAAATTGATGGGGATGAAGGCAAAAGTGGTAAAACCAGTAATATA
TCTGGAGATCTAGTTCATGCTCCTCTTGGGTTGTTCCCTCGACCTTGGCC
TCCTAGTGCTGATGCCTCTGAAGGTGGCCAGTTTAGTAAAGTTATTGAAT
ACTTCCGACTGCTTGGACGTGTAATGGCTAAAGCTCTTCAAGATGGGAGG
CTTTTAGACCTGCCATTTTCAACAGCATTCTACAAACTTGTTCTTGGTCA
CGAGCTTGATTTGCATGATATTATTCCCTTTGATGCCGAGTTTGGGAAGA
TTTTGCAAGAGTTGCATGTCATCATTTGTCGAAAACAACATTTAGAATCA
ATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTGCGTTTTCGTGGGGC
CCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCCTGGTTATCCAGACT
ATATTTTGAAACCAGGAGATGAAAATGTTGACATTAATAACTTGGAGGAA
TACATATCCTTGGTAGTTGATGCCACTGTCAAGACAGGCATCATGCGGCA
AATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCAT
TACAAATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGA
GAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGG
ATACACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAG
AATTCACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCA
CCTCGTCTTCCACCGGGTGGGTTGGCGGTGCTGATTCCCAAGCTTACCAT
TGTCAGAAAGCATTCTTCAACTGCCCCTAATACACCATCCAATGGAAACG
GGGCCTTCGGAATCAGCGGAAGAATGACCTGGCCAAGTGTCATGACCTTG
GGCCAATTACCTGAAACCTTCCTCCCTTACTCTACCAAGGGAAATTATGT
ATCAAAAAAATTGGGTTTTAGCCAAAAAGCCAAAGGGGGAGGAAATCTTT
TTAATTTTTTCTTGGATTTTCCCAAAAACTTACCCCAAAGGGGACCTTTT
TGTAATTTTAAAATTTATTGTGTTCTTTCACAAGTCAATTTTCCCCTTTC
CCCCGGGGGGGAAATTATTTTTTCCTTTTTTTTAAAAAAAAAGAAACCCA
CTAATTTTTTTTTTCAAACATAAAAAAAAAAAAGGGGGCGCGTGCTTTTT
TTTTTTTCCCCGCCCCCCCTCCCCTTTTTTTTATATTTTCTCA
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