DY257714

Overview
NameDY257714
Unique NameDY257714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1343
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.828e-12
Identity = 62/237 (26.16%), Postives = 106/237 (44.73%), Query Frame = 2
Query:  200 YFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIED-LCLDFTLPGYPDYILK-----PGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL-WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            +F L+G     A+ +  ++DL F  A YK +L  +  L D+       G+ LQEL                       L + G  +E+  CL+FT+      +++     PG +NV +  +N +E++   V+   +  +     AF +GF +V     L++F P EL  ++ G     WE   L E   +   Y+A  P +    E   EF  ++++ F  F+TG+ R+P  G+A L
Sbjct:  787 WFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPGLEDLKELSPTEGRSLQEL-----------------------LDYPGEDVEETFCLNFTICRESYGVIEQKKLIPGGDNVTVCKDNRQEFVDAYVNYVFQISVHEWYTAFSSGFLKVCGGKVLELFQPSELRAMMVGNSNYNWE--ELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASL 998          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.828e-12
Identity = 71/248 (28.63%), Postives = 109/248 (43.95%), Query Frame = 2
Query:  203 FRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVD---------LRFRGAPIEDLCLDFTLPG-----YPDYILKPGDENVDINNL--EEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLT 898
            FRL+G +M  A+ +   LD+ F    YK +L        IIP D       Q + V IC      S+T D+  + +          L   G   ED    F +          Y LKPG + + + N   +EY+ L  D  +   I +Q  AF  GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A L  K++
Sbjct:  502 FRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPP-----IIPSD-------QNIPVGIC------SVTVDDLCQIMPELAHGLSELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS 729          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.387e-12
Identity = 64/240 (26.67%), Postives = 98/240 (40.83%), Query Frame = 2
Query:  203 FRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLP----GYPDYI-LKPGDENVDINNLE--EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTI 901
            +  LG ++ K + +G  +D  F++ F    LGH     D+   D    + L  L                         + G    D+ L+FT+     G  + I L P   N+ + N    +YI LV +  +   + RQ  AF  GF Q+ D   L +F   E+  L+ G     +   L  H  +  GY   SP IV   E++ EF  + +R+F +FVT   R P  G   L+P   I
Sbjct:  765 YEFLGMLIGKCIYEGIQIDAAFASFFVAKWLGHPSYFDDLTSLDPNLYEGLVFLK-----------------------NYDGDVENDMALNFTVVHEEFGVRNVIDLIPNGSNISVTNENRLQYIHLVSNYYLNARLSRQCRAFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCI 981          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HERC4_RAT (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.387e-12
Identity = 57/229 (24.89%), Postives = 104/229 (45.41%), Query Frame = 2
Query:  197 EYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + F L+G +   A+ +  ++DL F  A YK +L  +  L D+     + G+ +Q+L               D+ EE   L F    +E+    F      + +L   D  V+  N +E++   VD      +    +AF AGF++V     L +F P+EL  ++ G    ++   L ++ ++   Y A+ P I    E+  E   ++++ F  F+TG+ R+P  G+  L
Sbjct:  793 DLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPDVGRSMQQLL----------DYPEDDIEETFCLNFT-ITVEN----FGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL 1005          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.387e-12
Identity = 69/248 (27.82%), Postives = 108/248 (43.55%), Query Frame = 2
Query:  203 FRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVD---------LRFRGAPIEDLCLDFTL-----PGYPDYILKPGDENVDINNLE--EYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLT 898
            FRL+G +M  A+ +   LD+ F    YK +L        ++P D       Q   V IC      S+T D+  + +          L + G   ED    F +          Y LKPG + + + N    EY+ L  D  +   I +Q  AF  GF+ V    +L +  P E++ L+CG  EL +  AL    ++D GY      I    +++  F  + Q+    F TG+ R+P GG+A L  K++
Sbjct:  500 FRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPP-----VVPSD-------QSTPVGIC------SVTIDDLCQVMPELAHGLKELLSYEGNVEEDFYSTFQVFQEEFGVIKSYNLKPGGDKIPVTNQNRREYVQLYTDFLLNKSIYKQFAAFYCGFHSVCASNALMLLRPEEVEILVCGSPEL-DMHALQRSTQYD-GYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADLNFKIS 727          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.118e-12
Identity = 57/229 (24.89%), Postives = 104/229 (45.41%), Query Frame = 2
Query:  197 EYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + F L+G +   A+ +  ++DL F  A YK +L  +  L D+     + G+ +Q+L               D+ EE   L F    +E+    F      + +L   D  V+  N +E++   VD      +    +AF AGF++V     L +F P+EL  ++ G    ++   L ++ ++   Y A+ P I    E+  E   ++++ F  F+TG+ R+P  G+  L
Sbjct:  793 DLFHLIGVICGLAIYNCTIVDLHFPLALYKKLLKKKPSLDDLKELMPDVGRSMQQLL----------DYPEDDIEETFCLNFT-ITVEN----FGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL 1005          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.118e-12
Identity = 70/247 (28.34%), Postives = 106/247 (42.91%), Query Frame = 2
Query:  203 FRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVD--------LRFRGAPIEDLCLDFTL-----PGYPDYILKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLT 898
            FRL+G +M  A+ +   LD+ F    YK +L        IIP D       Q + V IC          D C+   +        L   G   ED    F +          Y LKPG + + +   N +EY+ L  D  +   I +Q  AF  GF+ V    +L +  P E++ L+CG  +L +  AL    ++D GY      I    +++  F  D Q+    F TG+ R+P GG+A L  K++
Sbjct:  502 FRLVGILMGLAVYNSITLDIRFPPCCYKKLLS-----PPIIPSD-------QNIPVGIC-----NVTVDDLCQIMPELAHGLSELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDL-DMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKIS 729          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.072e-12
Identity = 61/244 (25.00%), Postives = 112/244 (45.90%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHE-----LDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEE--YISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM-GEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTI 901
            ++ F  +G+++ KA+ +G ++D+PF++ F   +LGH        + ++   D+EF K L  +      K++   +T      + D    G   + +C          + L PG + + + N  +  YI L+    + T I  Q  A  +GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTPD++  F +FVT   R P  G A L P  +I
Sbjct:  772 LQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQLLGHHHSVFYSSVDELPSLDSEFYKNLTSI------KRYDGDITDLGLTLSYDEDVMG---QLVC----------HELIPGGKTIPVTNENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPDERAMFLKFVTSCSRPPLLGFAYLKPPFSI 996          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: HERC4_MOUSE (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 9.071e-12
Identity = 57/229 (24.89%), Postives = 102/229 (44.54%), Query Frame = 2
Query:  197 EYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVL 883
            + F L+G +   A+ +  ++DL F  A YK +L  +  L D+       G+ +Q+L               D+ EE   L F    +E+    F      + +L   D  V+  N +E++   VD      +    +AF AGF++V     L +F P+EL  ++ G    ++   L ++ ++   Y A  P I    E+  E   ++++ F  F+TG+ R+P  G+  L
Sbjct:  793 DLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPAVGRSMQQLL----------DYPEDDIEETFCLNFT-ITVEN----FGATEVKELVLNGADTAVNRQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTN-YDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL 1005          
BLAST of DY257714 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.021e-11
Identity = 61/246 (24.80%), Postives = 108/246 (43.90%), Query Frame = 2
Query:  194 IEYFRLLGRVMAKALQDGRLLDLPFSTAFYKLVLGHELDLHDIIPFDAEFGKILQELHVIICRKQHLESMTSDNCEEAVDLRFRGAPIEDLCLDFTLPGYPDYI-------LKPGDENVDI--NNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIM-GEFTPDQQRAFCQFVTGAPRLPPGGLAVLIPKLTI 901
            ++ F  +G+++ KA+ +G ++D+PF++ F   +LGH    H +     +                 L S+ S+  +    ++     I DL L  TL    D +       L PG + + +   N   YI L+    + T I  Q  A  +GF  +     +++F+  EL  L+ G     +   L +H  +  G+      I+ L +I+  +FTP+++  F +FVT   R P  G A L P  +I
Sbjct:  774 LQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQMLGHH---HSVFYSSVD----------------ELPSLDSEFYKNLTSIKRYDGDIADLGL--TLSYDEDVMGQLVCHELVPGGKTIPVTDENKISYIHLMAHFRMHTQIKNQTAALISGFRSIIKPEWIRMFSTPELQRLISGDNAEIDLEDLKKHTVYYGGFHGSHRVIIWLWDILASDFTPEERAMFLKFVTSCSRPPLLGFAYLKPPFSI 998          
The following BLAST results are available for this feature:
BLAST of DY257714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HERC3_HUMAN1.828e-1226.16Probable E3 ubiquitin-protein ligase HERC3 OS=Homo... [more]
HECD2_PONAB1.828e-1228.63Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
YFK7_SCHPO2.387e-1226.67Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]
HERC4_RAT2.387e-1224.89Probable E3 ubiquitin-protein ligase HERC4 OS=Ratt... [more]
HECD2_MOUSE2.387e-1227.82Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
HERC4_HUMAN3.118e-1224.89Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
HECD2_HUMAN3.118e-1228.34Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
UBE3B_HUMAN4.072e-1225.00Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]
HERC4_MOUSE9.071e-1224.89Probable E3 ubiquitin-protein ligase HERC4 OS=Mus ... [more]
UBE3B_MOUSE2.021e-1124.80Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AC01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257714 ID=DY257714; Name=DY257714; organism=Citrus clementina; type=EST; length=1343bp
GAGAGTCGGACTTGCAATGTGGAGGTCAAATTCCTCATCAGAGAATCCGC
CAATGGAAATTGATGGGGATGAAGGCAAAAGTGGTAAAACCAGTAATATA
TCTGGAGATCTAGTTCATGCTCCTCTTGGGTTGTTCCCTCGACCTTGGCC
TCCTAGTGCTGATGCCTCTGAAGGTGGCCAGTTTAGTAAAGTTATTGAAT
ACTTCCGACTGCTTGGACGTGTAATGGCTAAAGCTCTTCAAGATGGGAGG
CTTTTAGACCTGCCATTTTCAACAGCATTCTACAAACTTGTTCTTGGTCA
CGAGCTTGATTTGCATGATATTATTCCCTTTGATGCCGAGTTTGGGAAGA
TTTTGCAAGAGTTGCATGTCATCATTTGTCGAAAACAACATTTAGAATCA
ATGACCTCTGATAATTGCGAAGAAGCTGTGGACTTGCGTTTTCGTGGGGC
CCCGATTGAAGATCTTTGCCTGGATTTTACTCTTCCTGGTTATCCAGACT
ATATTTTGAAACCAGGAGATGAAAATGTTGACATTAATAACTTGGAGGAA
TACATATCCTTGGTAGTTGATGCCACTGTCAAGACAGGCATCATGCGGCA
AATGGAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCAT
TACAAATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGA
GAGTTGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGG
ATACACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAG
AATTCACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCA
CCTCGTCTTCCACCGGGTGGGTTGGCGGTGCTGATTCCCAAGCTTACCAT
TGTCAGAAAGCATTCTTCAACTGCCCCTAATACACCATCCAATGGAAACG
GGGCCTTCGGAATCAGCGGAAGAATGACCTGGCCAAGTGTCATGACCTTG
GGCCAATTACCTGAAACCTTCCTCCCTTACTCTACCAAGGGAAATTATGT
ATCAAAAAAATTGGGTTTTAGCCAAAAAGCCAAAGGGGGAGGAAATCTTT
TTAATTTTTTCTTGGATTTTCCCAAAAACTTACCCCAAAGGGGACCTTTT
TGTAATTTTAAAATTTATTGTGTTCTTTCACAAGTCAATTTTCCCCTTTC
CCCCGGGGGGGAAATTATTTTTTCCTTTTTTTTAAAAAAAAAGAAACCCA
CTAATTTTTTTTTTCAAACATAAAAAAAAAAAAGGGGGCGCGTGCTTTTT
TTTTTTTCCCCGCCCCCCCTCCCCTTTTTTTTATATTTTCTCA
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