DY257715

Overview
NameDY257715
Unique NameDY257715
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1335
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257715_ssr1322 microsatellite DY257715_ssr1322:1322..1333. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9888 contig Ccv1_Contig9888:4..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257715 vs. ExPASy Swiss-Prot
Match: Y9F0_ENCCU (Putative methyltransferase ECU09_1500 OS=Encephalitozoon cuniculi GN=ECU09_1500 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.432e-17
Identity = 56/143 (39.16%), Postives = 80/143 (55.94%), Query Frame = 3
Query:  216 EKKYVHRVYDAIAPHFSSTRFAKWPKVATFL-NSLPSGSLVLDAGCGNGKYLGLNPDCFFIGCDISPSLIKICADRGHEVLV-ADAVNLPYRSDFGDAAISIAVLHHLSTESRRKKAIEELVRVVKKGSLVLITVWAVEQEDK 638
            E+++VHR YD  +  FS+TR   W     FL N     S+VLDAGCGNG+   L P    +G D    L+      G + LV  D + LP+     D  +S+AV+HHLST  RR++A++E+ RV+K G  +L+ VW    + K
Sbjct:   23 EERFVHRFYDENSREFSATRRRHWGMTRRFLDNYYTRESIVLDAGCGNGRSF-LVP--CMVGMDYCLGLLNDARAAGGQGLVRGDVLELPFVDCSFDLVLSVAVIHHLSTRCRRERAMKEMRRVLKDGGKMLLYVWGSSAKSK 162          
The following BLAST results are available for this feature:
BLAST of DY257715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y9F0_ENCCU1.432e-1739.16Putative methyltransferase ECU09_1500 OS=Encephali... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1AC04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257715 ID=DY257715; Name=DY257715; organism=Citrus clementina; type=EST; length=1335bp
GATCTCCGTACAGTACACCTTCTGTTGTAACCCTAAGCCTAATCGCTGAG
ATGTGAACTGAATCAGGAATTTCTGGAACTATGAGAGAAGTTAAAGTAAA
AGGTGCTTCTGATTTTTGTACCCTTGGAGCTGATGGAGAATCTAGCATTC
ATTCTGTATCTACAGGGGAGGACCAGCGATGCTCATCCTCAAGCATAAAA
TCTACTCCTGAATTAGAAAAGAAGTATGTCCATCGTGTTTATGATGCCAT
AGCTCCCCATTTCAGTTCCACTCGTTTCGCTAAGTGGCCAAAAGTTGCCA
CTTTTTTGAATTCTTTGCCTTCAGGGTCTCTTGTCTTGGATGCAGGATGT
GGAAATGGGAAGTATTTGGGTTTAAATCCGGATTGCTTCTTCATCGGTTG
TGATATTAGTCCTTCCTTAATTAAAATTTGTGCGGACAGGGGGCATGAAG
TTTTGGTTGCAGATGCTGTAAATCTCCCCTACAGATCTGATTTTGGCGAT
GCAGCCATCTCTATAGCCGTATTACATCATCTGAGCACTGAAAGCAGGAG
AAAGAAAGCAATTGAAGAATTAGTTAGGGTTGTCAAAAAGGGTAGCTTAG
TTCTAATAACAGTCTGGGCAGTGGAACAAGAGGATAAATCATTAGTTACC
AAATGGACTCCTCTTACTCAAAAGTATGTGGAAGAGTGGATAGGACCTGG
GAGTCCTCGAGTTCGTAGCCCTTCAGCTCGAACGTTAGAAAGCATCCCAG
AAACCGAGGATAATGGTTCTGAAGAGCAAGGAAAAGACCCAAAGCAAAGT
GTACCTGATAAGTTGTTGAGAATCTATAATTTTAACTTCTCAAAGTGAAG
ATGATTCAGTGATTTCTCAAGATGTGAAAATTTATCCCAAATCAACAGGA
AATATTTTTGTCCCTTTGGCACTTACCTTTACCCCCGTGCTAAAGTCAAG
TGGGGCATCCTGCTTGTGCTTCTTGCAAATGGGCCCAAGCAAAAAAAAAA
GAAAAAAAAGGGGGGCTGTAAGTGTAACAACCAAAAATTCCCATGTTCTT
TCTGGGGAAGGGGGAAACTTTGAAGAAAATTGGCCTTTTGAAAATCTCCA
CAATGGCATAAAATAATTTTTAATCTCATTTTTTTTAAAAAAAATCAAAT
TTGGGGGGCTTTTGTTTTTTTTCAAAAAAAAAACTTTTCTGGAAAAAAAA
TCCAATTTTTGGTTGTTTTTTAACCCGCGTGAAAACCAAAAATATTTTCT
ACAAAATTTGAAAAACCCCCCCCCCCTTATAGGGGGAAAAAACAAAAAAA
ATATTTTTTATTTATATATTTTTTGTTTGTTTGTT
back to top