DY263104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 1.811e-73 Identity = 137/200 (68.50%), Postives = 152/200 (76.00%), Query Frame = 1 Query: 55 MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA----------XXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRD 624 MSSR+SRT+YVGNLPGDIREREVEDLF KYGP+ IDLK+PPRPPGYAFVEF++ARDAEDAI GRDGYDFDGHRLRVELA E+RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD GTTG+VDYT Y+DMK+A+KKLDD+EFRNAFS YVRVREYD R+D Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKD 200
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 179.104 bits (453), Expect = 5.140e-44 Identity = 93/190 (48.95%), Postives = 122/190 (64.21%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------------YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVRE 606 +YVGNLPGD+RE+EVED+F+KYG I ++D+K R P +AFVEFE+ RDAEDA+R RDGY+FDG R+RVE YRV+V GLP + SWQDLKDHMR AGDVC++ V RDG TG+V++T Y+D+K+A++KLDD++FR + AY+RVRE Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRVRE 196
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 1.953e-43 Identity = 92/179 (51.40%), Postives = 118/179 (65.92%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 176.792 bits (447), Expect = 2.551e-43 Identity = 91/179 (50.84%), Postives = 118/179 (65.92%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 171.785 bits (434), Expect = 8.206e-42 Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 171.785 bits (434), Expect = 8.206e-42 Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 171.785 bits (434), Expect = 8.206e-42 Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 171.785 bits (434), Expect = 8.206e-42 Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 8.206e-42 Identity = 89/179 (49.72%), Postives = 117/179 (65.36%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL---AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE E RV+V+GLP S SWQDLKDHMR AGDVC++ V+RDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 1.400e-41 Identity = 91/189 (48.15%), Postives = 117/189 (61.90%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL-------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR ++VED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ RDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 202 The following BLAST results are available for this feature:
BLAST of DY263104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >DY263104 ID=DY263104; Name=DY263104; organism=Citrus clementina; type=EST; length=1318bpback to top |