EG026473

Overview
NameEG026473
Unique NameEG026473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:618..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.233e-35
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 287
            LSFK+A+WFWMT Q PKPSCH+V+   W+PSA +  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G+NLDCYNQRP+G
Sbjct:  149 LSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.389e-34
Identity = 63/100 (63.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLM 299
            ++FK+A+WFWMT Q PKPSCH VI + W PSA +  AGR+PGYG+ TNIINGGIECGQGG N+A  NRIGF+ T+C   G   G NLDCY QRP+G  L+
Sbjct:  198 IAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.389e-34
Identity = 60/103 (58.25%), Postives = 78/103 (75.73%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSAIWFWMT Q PKPSCH+VI   W+PS ++  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  216 ISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 4.040e-34
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            ++FK+AIWFWMTAQPPKPSCH VI  +W+PS  +  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCYNQR +
Sbjct:  233 IAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.277e-34
Identity = 60/103 (58.25%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSA+WFWMT Q PKPSCH+VII  W+PS+ +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  222 ISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 5.277e-34
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFK+A+WFWMT Q PKPSCH+VI   W PS+ +  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  GDNLDCY+QRP+G +L   S+
Sbjct:  214 ISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 5.277e-34
Identity = 61/103 (59.22%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSA+WFWMT Q PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  227 ISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.176e-33
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  216 ISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.176e-33
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  214 ISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.535e-33
Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSAIWFWMTAQ PKPSCH+VI   W PSA +  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  232 VSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
The following BLAST results are available for this feature:
BLAST of EG026473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIT_CARPA6.233e-3562.11Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_POPTR1.389e-3463.00Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI1_SOLTU1.389e-3458.25Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_ARATH4.040e-3463.83Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_TOBAC5.277e-3458.25Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_PEA5.277e-3460.19Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_TOBAC5.277e-3459.22Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_SOLTU1.176e-3357.28Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.176e-3357.28Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.535e-3358.25Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026473 ID=EG026473; Name=EG026473; organism=Citrus clementina; type=EST; length=476bp
TACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCA
AAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAT
TGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAA
TCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGCAAC
CGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGG
TGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGATGG
CACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTTAAT
AAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACAACT
AAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGACTGA
TCCAACATGGATCAATGAGTCTTCTC
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