EG026500

Overview
NameEG026500
Unique NameEG026500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:683..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.006e-23
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLM 234
            VI + W PSA +  AGR+PGYG+ TNIINGGIECGQGG N+A  NRIGF+ T+C   G   G NLDCY QRP+G  L+
Sbjct:  220 VITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.539e-23
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 222
            +VII  W PSA +  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDCYNQR +G
Sbjct:  178 DVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.115e-22
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 222
            +V+   W+PSA +  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G+NLDCYNQRP+G
Sbjct:  170 DVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.902e-22
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            +VI   W PS  +  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCYNQRP+
Sbjct:  257 DVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.535e-22
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VI   W PS+ +  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  GDNLDCY+QRP+G +L   S+
Sbjct:  235 DVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.535e-22
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VI   W+PS ++  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  237 DVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.229e-22
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            VI  +W PSA +  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  GDNLDCYNQRPY
Sbjct:  246 VITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.233e-21
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VII  W+PS+ +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  243 DVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.233e-21
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  248 DVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.747e-21
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            VII  W PS+ +  AGR+PGYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  244 VIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
The following BLAST results are available for this feature:
BLAST of EG026500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHIB_POPTR5.006e-2361.54Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIQ_TOBAC8.539e-2360.81Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIT_CARPA1.115e-2256.76Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_ORYSJ1.902e-2260.27Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_PEA5.535e-2256.10Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_SOLTU5.535e-2251.22Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ7.229e-2261.11Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_TOBAC1.233e-2152.44Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC1.233e-2153.66Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI2.747e-2154.32Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CC08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026500 ID=EG026500; Name=EG026500; organism=Citrus clementina; type=EST; length=411bp
GAAGTCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGG
CCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTG
AATGTGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTT
ACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTG
CTACAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGAT
CATCATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATA
AAAACTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGT
TACGCTCTTATTGCAAGTAAATTAAATAAGACTGATCCAACATGGATCAA
TGAGTCTTCTC
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