EG026521

Overview
NameEG026521
Unique NameEG026521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length301
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig838 contig Ccv1_Contig838:262..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG026521 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.912e-12
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:    3 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 116
            AEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  321 AEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
[Close]
BLAST of EG026521 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.912e-12
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 3 
Query:    3 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 116
            AEE+FQLGPLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct:  321 AEEVFQLGPLNEYERVGLEKAKEELAGSIQKGVDFIRK 358
[Close]
BLAST of EG026521 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:    3 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 116
            AEE++QLGPLNEYERIGLEKAK ELAGSIQKG+ F +K
Sbjct:  317 AEEVYQLGPLNEYERIGLEKAKDELAGSIQKGVEFIRK 354
The following BLAST results are available for this feature:
BLAST of EG026521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MDHG2_BRANA8.912e-1281.58Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA8.912e-1281.58Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH2.593e-1181.58Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1DG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026521 ID=EG026521; Name=EG026521; organism=Citrus clementina; type=EST; length=301bp
GAGCTGAAGAAATCTTCCAACTTGGACCTTTAAATGAATATGAGAGGATT
GGCTTGGAGAAAGCGAAGAAAGAGTTAGCTGGAAGCATTCAAAAGGGCAT
CTCCTTCAGCAAGAAATGAAGCGATGCCAAGAAAAATTCCATCGGTTAAG
TTTATTATCGCTCTTGAGTCACCGTCTCCTGTAATTAGCAAGCCTTAATG
TTGTACCCAGAAACAGTCGGAAAATGTATTTTTCCAACAAGCGACGAATT
GGCATGTAAAGCAGTTTGAATGAGCTCATTTCGTTTCAGAGGAGCAAAAC
C
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