EG026532

Overview
NameEG026532
Unique NameEG026532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:665..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.656e-27
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLM 252
            PKPSCH VI + W PSA +  AGR+PGYG+ TNIINGGIECGQGG N+A  NRIGF+ T+C   G   G NLDCY QRP+G  L+
Sbjct:  213 PKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.824e-27
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 240
            PKPSCH+V+   W+PSA +  AGRLPGYG+ TN++NGG+ECG+G N  V +R+GFF  +CG  G+  G+NLDCYNQRP+G
Sbjct:  164 PKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.401e-26
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 264
            PKPSCH+VI   W PS+ +  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  GDNLDCY+QRP+G +L   S+
Sbjct:  229 PKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.401e-26
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 264
            PKPSCH+VI   W+PS ++  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  231 PKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.391e-26
Identity = 50/79 (63.29%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPSCH VI  +W PSA +  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  GDNLDCYNQRPY
Sbjct:  239 PKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.122e-26
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 264
            PKPSCH+VII  W+PS+ +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  237 PKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.122e-26
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 264
            PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  242 PKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.955e-26
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 264
            PKPSCH VII  W PS+ +  AGR+PGYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  237 PKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.084e-26
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMA 255
            PKPSCH+VI  +W PS+ ++ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY+QRP+   L A
Sbjct:  248 PKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.186e-25
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNL 249
            PKPSCH VI   W PSA ++ AGR+PGYG+ TNIINGGIECGQGG N A  +RIGF+  +C   G   G NLDCY QRP+G  L
Sbjct:  250 PKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
The following BLAST results are available for this feature:
BLAST of EG026532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHIB_POPTR1.656e-2763.53Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_CARPA2.824e-2760.00Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_PEA1.401e-2659.09Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_SOLTU1.401e-2654.55Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ2.391e-2663.29Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_TOBAC3.122e-2655.68Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC3.122e-2656.82Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_GOSHI6.955e-2656.82Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI9_ORYSJ9.084e-2658.82Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR1.186e-2561.90Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026532 ID=EG026532; Name=EG026532; organism=Citrus clementina; type=EST; length=432bp
CCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGC
AATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATA
TAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGC
AACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCC
TGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGA
TGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTT
AATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACA
ACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGAC
TGATCCAACATGGATCAATGAGTCTTCTCCAG
back to top