FC868497

Overview
NameFC868497
Unique NameFC868497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig115 contig Ccv1_Contig115:134..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868497 vs. ExPASy Swiss-Prot
Match: Y1934_ARATH (Uncharacterized protein At1g09340, chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.809e-83
Identity = 154/214 (71.96%), Postives = 178/214 (83.18%), Query Frame = 2 
Query:   56 MASTVVVQHQTQPXXXXXXXXXXXXNGTRIHSQIQYRRKVLQPKVGLQITASSEKNILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPIAQQLPGESDQEFAEFSSKILHLKGDRKDYDFVKSSLSAKGFDVVYDINGREADEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHCETDTVDPKSRHKGKLNTESVLESKAXTGLL*ASLYIW 697
            MA  +++Q Q QP            NG ++H Q+QY+RKV QPK  L ++ASSEK ILIMGGTRFIG+FLSR+LVKEGHQVTLFTRGK+PIA+QLPGESDQ+FA+FSSKILHLKGDRKDYDFVKSSLSA+GFDVVYDINGREA+EVEPIL+ALP LEQ+IYCSSAGVYLKSD+LPHCE D VDPKSRHKGKL TES+L+SK         +YI+
Sbjct:    1 MAKMMMLQ-QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIY 213
The following BLAST results are available for this feature:
BLAST of FC868497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1934_ARATH4.809e-8371.96Uncharacterized protein At1g09340, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC31001B01EF AbioticL1 Citrus clementina cDNA clone C31001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868497 ID=FC868497; Name=FC868497; organism=Citrus clementina; type=EST; length=697bp
GATTAAACCAAGTCCCTCCAATACCCAGTTGAGAGGCAGAGGCCAAGCAG
CAACCATGGCAAGCACGGTGGTTGTGCAGCACCAAACACAGCCTTCTTTC
TCCACCCTCACTTCGTCTCTTTCTGACTTCAATGGCACTAGAATCCACTC
TCAAATTCAGTATAGGAGAAAGGTGTTGCAGCCAAAAGTAGGGCTGCAAA
TTACAGCTTCTAGTGAAAAGAACATTCTTATAATGGGAGGAACTCGATTC
ATTGGTGTATTTCTTTCAAGACTCCTAGTCAAAGAGGGTCATCAGGTGAC
CTTGTTTACTAGGGGAAAGGCACCAATCGCCCAACAATTGCCCGGTGAAT
CAGACCAGGAATTCGCCGAATTTTCTTCCAAGATCTTGCATTTGAAAGGA
GACAGAAAGGACTATGATTTTGTGAAATCCAGTCTCTCTGCCAAAGGCTT
TGATGTTGTTTATGATATAAATGGACGAGAGGCAGATGAAGTCGAACCCA
TATTGGATGCACTGCCAAATCTAGAACAGTTCATCTACTGCTCCTCAGCT
GGTGTTTATCTAAAATCTGACCTTTTACCACACTGTGAGACCGACACTGT
TGATCCAAAGAGCAGGCACAAGGGAAAGCTTAATACAGAGTCCGTACTGG
AATCAAAGGCGTNGACTGGACTTCTTTAAGCCAGTCTATATATATGG
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