FC872936

Overview
NameFC872936
Unique NameFC872936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872936_ssr718 microsatellite FC872936_ssr718:718..735. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10109 contig Ccv1_Contig10109:1..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872936 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.361e-20
Identity = 52/102 (50.98%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  245 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFG 547
            LI GIDFT SN W G  SF  +SLH I  G + NPY++ I I G+ L  FD D  I CYGFGD +T D+ VFSF   D  C GFE VL  Y++ VP ++  G
Sbjct:  123 LIVGIDFTKSNEWTGARSFNRKSLHFI--GSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAG 222          
BLAST of FC872936 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.185e-19
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  245 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQENDSPCQGFEHVLECYRKNVPNVQYFG 547
            LI GIDFT SN W G  SF  +SLH +   +T NPY++ I I G+ L  FD D  I CYGFGD +T D+ VFSF      C GFE VL  YR+ VP ++  G
Sbjct:  157 LIVGIDFTKSNEWTGAKSFNRKSLHHL--SNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAG 256          
BLAST of FC872936 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  245 LIFGIDFTASNLWAGKFSFENESLHTIVDGDTLNPYQEVIYITGKELVLFDGD-CIRCYGFGDDTTRDEGVFSFQEN---DSPCQGFEHVLECYRKNVPNVQYFG 547
            LIFGID+T SN + G+ +F+   LHTI D   +NPYQ+VI I GK L  FD D  I  YGFGD+   D G+F+  E    +  C GFE VL  Y +  P ++  G
Sbjct: 7319 LIFGIDYTKSNFYQGERTFDKRPLHTI-DPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSG 7422          
The following BLAST results are available for this feature:
BLAST of FC872936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH6.361e-2050.98E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH9.185e-1950.00E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL2.955e-1745.71Copine domain-containing protein 2 OS=Caenorhabdit... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AG04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872936 ID=FC872936; Name=FC872936; organism=Citrus clementina; type=EST; length=868bp
GGGGGCAGAGTAACGCGTCTAGTCCTGCCTGGGGAAAAGTTAAAGGGTTC
TTGCAGATCTAGCTGTCGCCGGTGCACAAATCCTCACAGTAATTATGGTT
ATTCCCAGCAACAATTGGCCATTTGCAGCTGCCGGAACAAGTCGTCGACA
ATCAAGTGTCGATTTTGCAGAACCACCAAGATTCGATGATGAGTTGCCGG
AGGCACCAGCAGGCGTGAGAGATCCTAGTAAAGTCCGATACAAACTGATT
TTTGGGATTGATTTCACTGCAAGCAATCTATGGGCTGGAAAATTCTCATT
CGAAAACGAAAGCCTTCACACCATTGTTGATGGTGACACCCTTAATCCAT
ACCAGGAAGTTATCTATATCACTGGAAAGGAGCTGGTTCTCTTTGACGGT
GACTGTATTCGTTGTTATGGTTTTGGTGATGATACCACACGGGATGAGGG
AGTGTTTAGTTTTCAAGAGAATGATTCCCCATGTCAGGGGTTTGAACACG
TCTTGGAATGCTACAGAAAGAATGTTCCCAATGTGCAATATTTTGGTCAG
CATTTTTCTCGTAACTCATCATGAAAACCAGATTTTCTTTTTTAAAAAGA
AAAAGAAATATGCATGCTGTAATAAGGAAATAAATGTGTGCTTGTTGATT
AAATAAGCTTAATTATTTACTGCCTTTGGATATGACATAGAGTTGATATA
TAATGTTTTTCTAAAAAACACACACACACACACACATATGTGATTGTTTT
AAGGGCCAACCTCTTATGCGCCAATGGTTGAGGCTGCGGTAGACATTGTG
GAAGAGAGTGGAGGCCCTGCACATGTATTGGTTATCATCACTAGTGGACA
GGTTGCTACGGGGAGTCA
back to top