FC872939

Overview
NameFC872939
Unique NameFC872939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14537 contig Ccv1_Contig14537:437..1202. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CDKG2_ORYSJ (Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 68/91 (74.73%), Postives = 80/91 (87.91%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLEEQRRK 300
            YN LR KFPA SF+G P+LS+AGFDLLN+LLTYDP+KR++A+AAL H+WFREVPLPKSKDFMPTFPA +  DRR +R +KSPDPLEEQR K
Sbjct:  607 YNRLRDKFPAASFSGRPILSEAGFDLLNNLLTYDPEKRLSADAALQHEWFREVPLPKSKDFMPTFPALNELDRRTKRYLKSPDPLEEQRLK 697          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CDKG2_ORYSI (Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica GN=CDKG-2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.373e-35
Identity = 68/91 (74.73%), Postives = 80/91 (87.91%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLEEQRRK 300
            YN LR KFPA SF+G P+LS+AGFDLLN+LLTYDP+KR++A+AAL H+WFREVPLPKSKDFMPTFPA +  DRR +R +KSPDPLEEQR K
Sbjct:  607 YNRLRDKFPAASFSGRPILSEAGFDLLNNLLTYDPEKRLSADAALQHEWFREVPLPKSKDFMPTFPALNELDRRTKRYLKSPDPLEEQRLK 697          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSJ (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. japonica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.674e-34
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLEEQRRK 300
            +N LR KF A SFTG P+LS+AGFDLLN LLTYDP+KRI+AE ALNH+WFRE+PLP+SKDFMPTFPA + QDRR ++ MKSPDPLEEQR K
Sbjct:  591 HNRLRDKFRAVSFTGGPMLSEAGFDLLNRLLTYDPEKRISAEDALNHEWFRELPLPRSKDFMPTFPALNEQDRRFKKHMKSPDPLEEQRMK 681          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CDKG1_ORYSI (Cyclin-dependent kinase G-1 OS=Oryza sativa subsp. indica GN=CDKG-1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.417e-33
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLEEQRRK 300
            +N LR KF A SFTG P+LS+AGFDLLN LLTYDP+KRI+AE ALNH+WFRE+PLP+SKDFMPTFPA + QDRR ++ MKSPDPLEEQ  K
Sbjct:  591 HNRLRDKFRAVSFTGGPMLSEAGFDLLNRLLTYDPEKRISAEDALNHEWFRELPLPRSKDFMPTFPALNEQDRRFKKHMKSPDPLEEQWMK 681          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CD11B_HUMAN (Cell division protein kinase 11B OS=Homo sapiens GN=CDK11B PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLE 285
            YN LRK+F A       +LSD GFDL+N  LTY P +RI+AE  L H++FRE PLP      PT+PA+  Q R  R    SP P E
Sbjct:  681 YNNLRKRFGA-------LLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRG--TSPRPPE 757          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CD11A_HUMAN (Cell division protein kinase 11A OS=Homo sapiens GN=CDK11A PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.056e-12
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLE 285
            YN LRK+F A       +LSD GFDL+N  LTY P +RI+AE  L H++FRE PLP      PT+PA+  Q R  R    SP P E
Sbjct:  666 YNNLRKRFGA-------LLSDQGFDLMNKFLTYFPGRRISAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRG--TSPRPPE 742          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CDK11_MOUSE (Cell division protein kinase 11 OS=Mus musculus GN=Cdk11 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.379e-12
Identity = 42/86 (48.84%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLE 285
            YN LRK+F A       +LSD GFDL+N  LTY P +RI AE  L H++FRE PLP      PT+PA+  Q R  R    SP P E
Sbjct:  670 YNNLRKRFGA-------LLSDQGFDLMNKFLTYYPGRRINAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQRVKRG--TSPRPPE 746          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: YP62_CAEEL (Putative serine/threonine-protein kinase B0495.2 OS=Caenorhabditis elegans GN=B0495.2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLEEQRRK 300
            YN LRK+F A       +L+D GF LLN LLT DP  R +A  AL+H+WF E P P   +  PTFPA+  Q+       K+P P ++++++
Sbjct:  603 YNQLRKRFLA-----GRLLNDTGFKLLNGLLTLDPKNRFSATQALDHEWFTEEPYPVPPEEFPTFPAKSEQN-------KAPPPAKQKQQE 681          
BLAST of FC872939 vs. ExPASy Swiss-Prot
Match: CDK11_RAT (Cell division protein kinase 11 OS=Rattus norvegicus GN=Cdk11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 1
Query:   28 YNLLRKKFPATSFTGSPVLSDAGFDLLNSLLTYDPDKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRMRRMMKSPDPLE 285
            YN LRK+F A       +LSD GFDL+N  LTY P +RI AE  L H++FRE PLP      PT+PA+  Q    R    SP P E
Sbjct:  322 YNNLRKRFGA-------LLSDQGFDLMNKFLTYYPGRRINAEDGLKHEYFRETPLPIDPSMFPTWPAKSEQQCVKRG--TSPKPPE 398          
The following BLAST results are available for this feature:
BLAST of FC872939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CDKG2_ORYSJ3.373e-3574.73Cyclin-dependent kinase G-2 OS=Oryza sativa subsp.... [more]
CDKG2_ORYSI3.373e-3574.73Cyclin-dependent kinase G-2 OS=Oryza sativa subsp.... [more]
CDKG1_ORYSJ1.674e-3474.73Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
CDKG1_ORYSI1.417e-3373.63Cyclin-dependent kinase G-1 OS=Oryza sativa subsp.... [more]
CD11B_HUMAN1.056e-1248.84Cell division protein kinase 11B OS=Homo sapiens G... [more]
CD11A_HUMAN1.056e-1248.84Cell division protein kinase 11A OS=Homo sapiens G... [more]
CDK11_MOUSE1.379e-1248.84Cell division protein kinase 11 OS=Mus musculus GN... [more]
YP62_CAEEL8.939e-1241.76Putative serine/threonine-protein kinase B0495.2 O... [more]
CDK11_RAT8.939e-1247.67Cell division protein kinase 11 OS=Rattus norvegic... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AG07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872939 ID=FC872939; Name=FC872939; organism=Citrus clementina; type=EST; length=766bp
GCGGGGGGTCACAAACGCGACCCAAAGTATAATCTATTGCGCAAGAAATT
CCCAGCAACATCTTTCACTGGATCACCAGTTTTATCTGATGCTGGCTTTG
ATTTATTAAACTCACTGTTAACATATGATCCTGACAAGCGGATAACAGCT
GAAGCTGCACTTAATCATGATTGGTTCCGTGAAGTTCCACTTCCGAAGTC
CAAAGATTTTATGCCTACTTTTCCTGCTCAACATGCTCAAGACAGGCGTA
TGCGAAGAATGATGAAGAGTCCAGATCCTTTAGAAGAGCAGCGTAGAAAG
GAGCTGCAACAAGGGGAACTAGGTACTGGTGGTTTATTTGGTTAGGAGAA
ATTAGTTGATTGAGCAACAATGGCAAAGATCCCTGTGCTTTAGATTTCTG
TAGTCGTTTGCTATGACCATGGTTGAGGTGAGGGATATGCATTCAACAGA
AGTTCCGAACATTGCTTGTCAGACGATCATTCATGCTGTTTTTTAGCAGG
CATCCACAGTGATTTGTATGGAGAAATTGTTTGCACCATCCTGTCAACCA
GATTTCTTGCAGGTTAACTTTGTTCAGTGCTGGGGATCATGTAGAAATGC
ATCTGTGACATTGCTTGCATCGCAAGGTGTGGCTTAACAGCTTTTCTTCT
TTAATAGAGCAATTTCAGCTGGAACTTGTGTATGTAACATATCTTCATTG
GCACATTGTAAACAATTATCTCGAAATTTGGTATTGAATTTGAAATATTC
TGGATTTTACTGGCGG
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