FC872951

Overview
NameFC872951
Unique NameFC872951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.862e-51
Identity = 98/160 (61.25%), Postives = 119/160 (74.38%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLDQ 482
            PLLAAG++PLLK++KI Q IDT S T+ N                   EVRSP+RIQV FKEG+LQPP+IKS +DLP N+NIFGQ ++L P+ Q+L PL+  V +ISR +SGQ PLK+PIPGERT SWL+ TYLD+D RISRGDGGLFVL +EGS LLDQ
Sbjct:  199 PLLAAGSLPLLKLDKISQTIDTDSFTVVNSTTLSSPFASFSFSVSASFEVRSPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQQLSLGPLLQSLGPLENVVANISRVISGQSPLKIPIPGERTSSWLITTYLDKDLRISRGDGGLFVLAREGSSLLDQ 358          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.303e-49
Identity = 98/161 (60.87%), Postives = 121/161 (75.16%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPG-ERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLDQ 482
            P+LA GA PL KV++I Q+IDT+S+TI N                   +V+SPSRI+VQFKEG+ QPP I S+VDLP  ++IFGQ I+L PVQQ L+PLQ+A  SI+ ++SGQPPLK+PIPG  R +SWLL TYLD+D RISRGDGGLF+LVKEGSPLLDQ
Sbjct:  213 PILAVGAAPLFKVDEISQEIDTNSMTIVNASTISSPFASFSFSATASFDVQSPSRIEVQFKEGSFQPPKISSSVDLPAEVDIFGQKISLGPVQQVLNPLQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGDGGLFILVKEGSPLLDQ 373          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP3_BRACM (Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 96/159 (60.38%), Postives = 119/159 (74.84%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLD 479
            PLLAAG+ PLLKV+ I Q IDT SL+I+N                   EVR+PSRI+V FKEGTL+PP+IKS+VDLP ++ +FGQ INLS ++Q+L+PLQ+   +ISRA+SGQPPLK+P PG R  SWLL TYLD+D RISRGDGGLFVL +EGS LL+
Sbjct:  201 PLLAAGSTPLLKVKSISQSIDTKSLSIDNSTTLSSPFADFSFSATASFEVRTPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLKQSLNPLQDVAANISRAISGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGLFVLAREGSSLLE 359          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP3_ARATH (Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.038e-47
Identity = 95/159 (59.75%), Postives = 118/159 (74.21%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGGLFVLVKEGSPLLD 479
            PLLAAG+ PLLKV+ I Q IDT++L I+N                   EVRSPSRI+V FKEGTL+PP IKS+VDLP ++ +FGQ I+LS ++Q+L+PLQ+   +ISRA+SGQPPLK+P PG R  SWLL TYLD+D RISRGDGGLFVL +EGS LL+
Sbjct:  217 PLLAAGSTPLLKVKSISQSIDTNNLIIDNSTTLSSPFADFSFSATASFEVRSPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANISRALSGQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDGGLFVLAREGSSLLE 375          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 71/160 (44.38%), Postives = 107/160 (66.88%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLLD 479
            PLL+ G +PL+KV++I Q ID+ + T+EN                   E+RSP R+Q++F+EG +  P +  ++++P  +   GQ I+L+P++  L+ +Q+   S++R +S QPPLK  +PG+  QSWLL TYLD+D RISRGDGG +FVL+KEGSPLL+
Sbjct:  159 PLLSRGIVPLVKVDEISQTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQKIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLN 318          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.470e-36
Identity = 68/160 (42.50%), Postives = 107/160 (66.88%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLLD 479
            PLL+ G +PL+KV++I Q ID+ + T++N                   E+RSP R+Q++F++G +  P +  ++++P  + + GQ I+L+P++  L+ +Q+   S++R +S QPPLK  +P +  QSWLL TYLD+D RISRGDGG +FVL+KEGSPLL+
Sbjct:  150 PLLSRGIVPLIKVDEISQTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLN 309          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.347e-34
Identity = 70/159 (44.03%), Postives = 103/159 (64.78%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGD-GGLFVLVKEGSPLL 476
            PLL+ G +PL++VE+I Q ID+ S T++N                   EVRSP R+Q++F+EG +  P +  ++ LP N+   GQ I+LSP +  ++ +Q+   S+++++S QPP+K PI     QSWLL TYLD++ RISRGD G +FVL+KEGSPLL
Sbjct:  166 PLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLL 324          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.001e-34
Identity = 67/160 (41.88%), Postives = 106/160 (66.25%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLLD 479
            PLL+    PL+KV++I Q ID+ S T++N                   E+RSP R+Q++F++G +  P +  ++++P ++ + GQ I+L+P++  L+ +Q+   S++R +S QPPLK  +P + TQSWLL TYLD+D RISRGDGG ++VL+KEGS LL+
Sbjct:  158 PLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIKEGSSLLN 317          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.920e-34
Identity = 72/160 (45.00%), Postives = 104/160 (65.00%), Query Frame = 3
Query:    3 PLLAAGAIP-LLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDG-GLFVLVKEGSPLL 476
            PLL +G++P L+KVE+I Q ID+ + T++N                   EVRSP R+Q++F EG +  P +  ++ LP    +FGQNI+L+P++   S ++ A  S++R +SGQPPLK+PI  +  +SWLL TYLD++ RISRGDG  +FVL KEGS LL
Sbjct:  159 PLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL 318          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.687e-34
Identity = 69/160 (43.12%), Postives = 104/160 (65.00%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLLD 479
            PLL+    PL+KV++I Q ID+ S T+ N                   EVRSP R+QV+F++G +  P +  ++++P  + + GQ I+L+P++  L+ +Q+   S++R +S QPPLK  +PG+  QSWLL TYLD+D RISRGDGG +FVL++EGS LL+
Sbjct:  167 PLLSRRISPLVKVDEISQTIDSDSFTVHNSVRFASPLATTSLSTNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPIKGLLTSVQDTASSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIREGSSLLN 326          
The following BLAST results are available for this feature:
BLAST of FC872951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PG1_PEA7.862e-5161.25Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]
PAP3_ORYSJ3.303e-4960.87Probable plastid-lipid-associated protein 3, chlor... [more]
PAP3_BRACM1.639e-4860.38Plastid lipid-associated protein 3, chloroplastic ... [more]
PAP3_ARATH4.038e-4759.75Probable plastid-lipid-associated protein 3, chlor... [more]
PAP2_BRACM1.439e-3644.38Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP2_ARATH5.470e-3642.50Probable plastid-lipid-associated protein 2, chlor... [more]
LIPC_SOLTU1.347e-3444.03Light-induced protein, chloroplastic OS=Solanum tu... [more]
PAP1_ARATH3.001e-3441.88Probable plastid-lipid-associated protein 1, chlor... [more]
PAP2_ORYSJ3.920e-3445.00Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_BRACM6.687e-3443.13Plastid lipid-associated protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872951 ID=FC872951; Name=FC872951; organism=Citrus clementina; type=EST; length=682bp
TGCCGCTGTTGGCTGCTGGTGCAATACCTCTTTTGAAAGTGGAAAAGATA
TGCCAAAAGATTGACACCAGTAGCCTCACTATTGAGAACTCGACTACATT
GTCCAGTCCCTTTGCTTCTTTCTCTTTCAGTGCAACTGCCTCCTTTGAAG
TTCGAAGCCCTTCTAGAATACAGGTTCAATTTAAGGAAGGTACCCTGCAA
CCTCCAGATATAAAGTCAACTGTTGATCTCCCAGGAAATTTAAATATTTT
TGGGCAGAATATCAATCTGTCACCAGTGCAACAAACTCTCTCCCCACTAC
AGGAGGCAGTGGGAAGTATTTCAAGAGCCGTTTCTGGTCAGCCGCCACTT
AAGGTGCCAATTCCAGGTGAACGGACCCAGTCTTGGCTTCTTATTACATA
CCTTGATGAGGATTTTCGTATCTCAAGGGGGGACGGCGGTCTTTTTGTGC
TTGTTAAAGAAGGGAGTCCTCTTCTAGATCAGTAGCCAGCAGACTCATTG
AAGAAGGAACAATTTGAAAATTGAAACCATTTTGATGGGATACAGTTGTA
AGAATCTCATTTTTCTTTCTTCATTCAAGTGGAGCAGAATGTGAAAAAAT
TGGAATGGAATTTTACAAAGGTTAATCATTTCTGTTGATTTTTTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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