FC875276

Overview
NameFC875276
Unique NameFC875276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875276_ssr27 microsatellite FC875276_ssr27:27..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig676 contig Ccv1_Contig676:20..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.216e-92
Identity = 164/195 (84.10%), Postives = 169/195 (86.67%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 639
            MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVD AH AIRNDPRINW+CNPVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WKRN
Sbjct:    1 MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRN 195          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.754e-90
Identity = 157/195 (80.51%), Postives = 167/195 (85.64%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 639
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKN 195          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.754e-90
Identity = 157/195 (80.51%), Postives = 167/195 (85.64%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 639
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKN 195          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.351e-87
Identity = 151/195 (77.44%), Postives = 163/195 (83.59%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 639
            MGAY ++ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+EV+LVD AH  IRNDPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRN 195          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.192e-86
Identity = 151/195 (77.44%), Postives = 165/195 (84.62%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 639
            MGAY ++ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+E+ILVD AH+AIR DPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRN 195          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15B_YEAST (60S ribosomal protein L15-B OS=Saccharomyces cerevisiae GN=RPL15B PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.207e-66
Identity = 123/194 (63.40%), Postives = 137/194 (70.62%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVILVDP H AIR D R NW+CNPVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR
Sbjct:    1 MGAYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKR 193          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.801e-66
Identity = 125/195 (64.10%), Postives = 140/195 (71.79%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRN 639
            MGA  ++ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ                       YGKPTNQGV QLK+QRS +S AEER GR+   LRVLNSYWIN+DSTYKYFEVILVDP H AIR DPRINW+ NPVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWKR+
Sbjct:    1 MGALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWKRH 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15A_YEAST (60S ribosomal protein L15-A OS=Saccharomyces cerevisiae GN=RPL15A PE=1 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.515e-65
Identity = 122/194 (62.89%), Postives = 137/194 (70.62%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 636
            MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR
Sbjct:    1 MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKR 193          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 194          
BLAST of FC875276 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 248.054 bits (632), Expect = 3.375e-65
Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query:   55 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKR 636
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRR 194          
The following BLAST results are available for this feature:
BLAST of FC875276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_PETHY7.216e-9284.1060S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL152_ARATH6.754e-9080.5160S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH6.754e-9080.5160S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15B_PICMA5.351e-8777.4460S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA1.192e-8677.4460S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15B_YEAST5.207e-6663.4060S ribosomal protein L15-B OS=Saccharomyces cerev... [more]
RL15_NEUCR6.801e-6664.1060S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15A_YEAST1.515e-6562.8960S ribosomal protein L15-A OS=Saccharomyces cerev... [more]
RL15_RAT3.375e-6563.0860S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB3.375e-6563.0860S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]

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Properties
Property NameValue
Genbank descriptionC31402B08EF CTVClemen1 Citrus clementina cDNA clone C31402B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875276 ID=FC875276|Name=FC875276|organism=Citrus clementina|type=EST|length=689bp
GAAAACCTAGTCGCACAGATACTGCGCAGCTCAGCTCAGCTCAGCTCAGA
GCCAATGGGGGCTTACACGTTCGTGTCGGAGCTATGGAGGAAGAAGCAGT
CAGATGTGATGAGGTTCTTGCAGAGGGTGAGGTGTTGGGAGTACCGCCAA
CATCCATCTATTGTTAGGGTCACCCGTCCCACTCGACCTGACAAGGCTCG
ACGCTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTTTATCGTGTGCGGG
TAAGGCGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTGTATGGT
AAACCCACAAACCAGGGTGTTACTCAACTGAAGTTTCAGCGCAGCAAGAG
GTCTGTTGCAGAGGAGCGTGCCGGTCGTAAGTTGGGAGGTCTTAGGGTTC
TCAATTCTTACTGGATCAATGAGGACTCCACTTATAAGTACTTTGAGGTG
ATCTTGGTTGATCCTGCTCATAATGCCATCCGAAATGACCCAAGAATTAA
TTGGTTATGCAATCCTGTCCATAAGCACAGGGAACTCCGTGGTCTTACTT
CTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAGGACACTTGCACCAC
AAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGAAACATACTCTTTCC
CTCCGTCGCTACCGTTGATCATTGTTATGGTTTTGATGT
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