FC875305

Overview
NameFC875305
Unique NameFC875305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875305 vs. ExPASy Swiss-Prot
Match: HTR7A_DICDI (HEAT repeat-containing protein 7A homolog OS=Dictyostelium discoideum GN=heatr7a PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 75/237 (31.65%), Postives = 129/237 (54.43%), Query Frame = 3
Query:   15 LLEQMVEALCRHVSDESPTVRGLCLRGLVQIPSIHIHQ---YATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQQEAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFN--SHCFNSDH-RSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSIL 704
            L+++++  L   + D  P V+ + L+GL  I S  + Q   YA  V+  +   +DD DE++ +  +  L  I + + +  V PIL+N+  R+R      N  +R  +F  FG+L  FG GS  + F EQIH+ LP LI+H+ DD  SV+ +C+ TL Q++  M        FN  S  F  D+ + +YE F+ D ++  + ++P R++ ++ + I+ F++ W  ++ NA  F   IL
Sbjct: 1366 LIQRLINTLLNSLVD--PLVKLISLKGLSNIVSAGVEQTNRYAPTVIDALSTSIDDQDETMAMECMLGLSKIFEVADEGRVAPILVNICNRIRPAFEKPNDSIRAASFQLFGSLWRFGSGSACDPFYEQIHSSLPSLIMHLNDDVQSVKNSCKKTLFQLSTLMRSQDAMDYFNNKSKGFVGDNDQPNYEEFLLDFSKLLIINYPERVNYFVMTVIEFFKSTWVNLRGNAATFIGFIL 1600          
BLAST of FC875305 vs. ExPASy Swiss-Prot
Match: HRT7A_BOVIN (HEAT repeat-containing protein 7A OS=Bos taurus GN=HEATR7A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 60/229 (26.20%), Postives = 110/229 (48.03%), Query Frame = 3
Query:   15 LLEQMVEALCRHVSDESPTVRGLCLRGLVQIP---SIHIHQYATQVLSVILALLDDLDESVQLTAVSCLLTILKSSSK-DA--VEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQQEAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANA 680
            LLE ++  L     D S  VR L L GL  I       +  ++ Q+L+ ++  LDD D+   L A+  ++ + +     DA  +  +LL+++VR+R    S  +++R  +   FG L+    G  ++ FLEQ+   L  L+LH+ D    V  ACR  L+   P +E   +  +F  H     H   +  F+    +  ++HFP  +   + +++  +++ W  ++A A
Sbjct: 1371 LLESLLYNLMARQKDTSARVRRLVLHGLANITLGSPDKVQTHSPQLLTAMIGGLDDGDDPHSLVALEAMVGLARLMDLVDAWDLHAVLLHIAVRIRPFFDSERMELRSVSIGLFGHLNKACRGDCKDVFLEQVVGGLVPLLLHLRDPHAPVVTACRFALRMCGPNLECEELAAVFQRH-LQEGHDLHFGEFLNTTCKHLMRHFPDLLGRLLSTSLFYYKSSWEDVRAAA 1598          
BLAST of FC875305 vs. ExPASy Swiss-Prot
Match: HTR7A_HUMAN (HEAT repeat-containing protein 7A OS=Homo sapiens GN=HEATR7A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 58/237 (24.47%), Postives = 108/237 (45.57%), Query Frame = 3
Query:   15 LLEQMVEALCRHVSDESPTVRGLCLRGLVQIPS---IHIHQYATQVLSVILALLDDLDES---VQLTAVSCLLTILKSSSKDAVEPILLNLSVRLRNLQVSMNVKMRRNAFAAFGALSNFGVGSQQEAFLEQIHAMLPRLILHIYDDDLSVRQACRNTLKQVAPFMEI-GVYGIFNSHCFNSDHRSDYETFVRDLTRQFVQHFPSRIDSYMGSTIQAFEAPWPIIQANAIYFSSSIL 704
            LL+ ++E+L     D   +VR L LRGL  + S     +  +  Q+L+ ++  LDD D     V L A+  L  ++       +   LL++++R+R    S  ++ R  +   FG L+    G  ++ FL+Q+   L  L+LH+ D   +V  ACR  L+   P +    +   F  H         +  F+    +  + HFP  +   + + +  F++ W  ++A A  F+  ++
Sbjct: 1360 LLDSLLESLAARQKDTCASVRRLVLRGLANLASGCPDKVRTHGPQLLTAMIGGLDDGDNPHSPVALEAMLGLARLVHLVESWDLRSGLLHVAIRIRPFFDSEKMEFRTASIRLFGHLNKVCHGDCEDVFLDQVVGGLAPLLLHLQDPQATVASACRFALRMCGPNLACEELSAAFQKH-LQEGRALHFGEFLNTTCKHLMHHFPDLLGRLLTTCLFYFKSSWENVRAAAPLFTGFLV 1595          
The following BLAST results are available for this feature:
BLAST of FC875305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HTR7A_DICDI5.969e-2631.65HEAT repeat-containing protein 7A homolog OS=Dicty... [more]
HRT7A_BOVIN6.192e-1526.20HEAT repeat-containing protein 7A OS=Bos taurus GN... [more]
HTR7A_HUMAN1.525e-1324.47HEAT repeat-containing protein 7A OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionC31402E03EF CTVClemen1 Citrus clementina cDNA clone C31402E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875305 ID=FC875305; Name=FC875305; organism=Citrus clementina; type=EST; length=742bp
GTGGGTTTGATTCCCTATTAGAACAGATGGTTGAAGCATTGTGTCGGCAT
GTATCGGATGAATCTCCTACTGTCAGAGGCCTTTGTTTAAGAGGACTTGT
GCAGATACCATCAATCCACATTCATCAGTACGCAACTCAAGTCCTTAGTG
TGATATTGGCTTTGCTTGATGATTTAGATGAATCAGTGCAGCTAACTGCA
GTTTCATGCTTGCTGACGATTCTCAAGTCATCATCCAAAGATGCCGTGGA
ACCAATTTTGCTAAACCTTTCTGTGCGGCTCCGCAATCTTCAAGTAAGCA
TGAATGTTAAGATGCGACGAAACGCCTTTGCAGCATTTGGGGCGCTGAGC
AACTTTGGAGTTGGGTCACAGCAGGAGGCATTTCTCGAGCAGATACATGC
TATGCTGCCACGCTTGATTTTGCATATATATGACGATGATCTTAGTGTTA
GACAGGCTTGCCGAAATACTCTTAAACAAGTTGCTCCCTTTATGGAAATA
GGAGTGTATGGTATCTTCAACTCACATTGTTTTAATTCTGATCATAGAAG
CGACTATGAAACTTTTGTAAGAGATCTCACCAGGCAGTTTGTGCAGCACT
TTCCATCCCGAATTGATAGTTATATGGGATCAACAATACAGGCTTTTGAA
GCACCATGGCCCATCATTCAGGCGAATGCAATTTACTTCTCCAGTAGCAT
TCTCTGTCTTTGTGATGATCACACATCTTATCTCTTTCTATA
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