FC875308

Overview
NameFC875308
Unique NameFC875308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:2..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.483e-35
Identity = 88/195 (45.13%), Postives = 106/195 (54.36%), Query Frame = 1
Query:  142 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDE 657
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAK  FP+E
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.257e-33
Identity = 87/193 (45.08%), Postives = 106/193 (54.92%), Query Frame = 1
Query:  142 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDETPAA 669
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAK  FP+E   A
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKA 187          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.267e-25
Identity = 76/188 (40.43%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  142 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDETPAAA 672
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAK  FP E P  A
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTA 182          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.242e-24
Identity = 71/171 (41.52%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  142 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPD 654
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK  FPD
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPD 136          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  448 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPD 654
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK  FP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.176e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  460 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDET 660
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK  FP+E+
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNES 84          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  382 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDE 657
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK  FP++
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPED 135          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 42/89 (47.19%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  388 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFP 651
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK  FP
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 42/80 (52.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  415 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPD 654
            GS   K  E +  S ER +K  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               RG KAK  FP+
Sbjct:   42 GSAVTKECESSM-SLERPKK--YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE 118          
BLAST of FC875308 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 36/68 (52.94%), Postives = 40/68 (58.82%), Query Frame = 1
Query:  469 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKGYFPDETPAAA 672
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK  FP+    A+
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLAS 155          
The following BLAST results are available for this feature:
BLAST of FC875308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RAP22_ARATH3.483e-3545.13Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH4.257e-3345.08Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ3.267e-2540.43Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH1.242e-2441.52Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH1.470e-1760.87Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH6.176e-1656.72Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH6.829e-1543.48Ethylene-responsive transcription factor ERF110 OS... [more]
EF109_ARATH1.165e-1447.19Ethylene-responsive transcription factor ERF109 OS... [more]
RAP26_ARATH2.595e-1452.50Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH4.426e-1452.94Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31402E06EF CTVClemen1 Citrus clementina cDNA clone C31402E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875308 ID=FC875308; Name=FC875308; organism=Citrus clementina; type=EST; length=674bp
GATCTCATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAA
CAAAAGCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCT
TTAGTGCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGA
GGTGCTATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAA
GAAGCTGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACA
AGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAA
GGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGT
TGATGCCGACTCGATGATGGCTGATATTAAGCCTTTCACTTTCTCAGCTG
GTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAA
AAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCG
TCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTC
GTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTAT
GATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGGTTACTTTCC
AGATGAAACTCCTGCTGCTGCTCC
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