FC875310

Overview
NameFC875310
Unique NameFC875310
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875310 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:   29 IVGLITERDSSAWKVGPGIALVSVMCSGLFGSCMNNSVHTWALRLKGPVFVAMFKPLSIAIAVAMGVMFLGDTLYLGSLVGATIISLGFYTVMWGKAKEE 328
            I+    E D   WK+  G  L +++ +G   S +  SV  W +   GPVFVA+++P+       M  + LG+  YLG + GA +I +G Y V+WGK++E+
Sbjct:  245 IIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEK 344          
The following BLAST results are available for this feature:
BLAST of FC875310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA1.212e-1335.00Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC31402E08EF CTVClemen1 Citrus clementina cDNA clone C31402E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875310 ID=FC875310; Name=FC875310; organism=Citrus clementina; type=EST; length=649bp
CAATTTATGTGTGAGCTTCGTAGCTGCCATTGTGGGGTTAATCACTGAAA
GAGATTCAAGTGCCTGGAAAGTAGGACCAGGTATTGCATTGGTCTCCGTC
ATGTGCTCGGGACTATTTGGATCATGCATGAACAATTCTGTTCACACTTG
GGCATTGCGCCTGAAGGGACCGGTCTTTGTTGCAATGTTCAAGCCATTGT
CGATAGCCATTGCAGTTGCCATGGGCGTCATGTTCCTTGGTGATACACTC
TATCTTGGAAGCCTTGTTGGAGCAACAATAATATCTCTAGGCTTTTATAC
TGTGATGTGGGGAAAAGCAAAAGAAGAGGTAAGTGAAGATCCTGGAGTTG
ATAGCCAGGAATCAGCAGCTGCCCAGAAAGTACCTTTATTGCAGAGTCGT
AAAAATGAACTGGTATAGAGTAAAAAAGAAGCAAATGAATGGTCAAATGT
GGAGTACTCGACATTTATCTCCGTAGGATGCTTTAGGAGCATGGCAGAAT
GTAAAACAAGTCAAAAGGGTGTGTATATGCAATGGGTCTAGAAGCAAACA
ATCGCAAATTCTCTCTTAATAGGCCTAAGTAAAAGGCACAAAAGAAGAAT
TTGTGTAAGTTAAGGATTATGCAATAGTATCAATCCCTATTCAGCGTTC
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