FC875324

Overview
NameFC875324
Unique NameFC875324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10475 contig Ccv1_Contig10475:88..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: FIE_ARATH (Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2)

HSP 1 Score: 344.739 bits (883), Expect = 2.809e-94
Identity = 157/210 (74.76%), Postives = 185/210 (88.10%), Query Frame = 3
Query:   81 MARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKXVWTY 710
            M++  +G E +VGSLTPS K+ Y+VTN++QEGK+PLYAVVFNF+D+R+F+VF T GGNR+T+Y CL  G I+ALQSY DEDKEESFYTVSWAC V+G P++ AGG+ GIIRVIDV++E +HKS VGHGDS+NEIRTQPLKP LV++ASKDESVRLWNV+TGICILIFAGAGGHR EVLSVDFHPSDIYR ASCGMD T+KIWSMK  WTY
Sbjct:    1 MSKITLGNESIVGSLTPSNKKSYKVTNRIQEGKKPLYAVVFNFLDARFFDVFVTAGGNRITLYNCLGDGAISALQSYADEDKEESFYTVSWACGVNGNPYVAAGGVKGIIRVIDVNSETIHKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLWNVETGICILIFAGAGGHRYEVLSVDFHPSDIYRFASCGMDTTIKIWSMKEFWTY 210          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: FIE2_MAIZE (Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.062e-89
Identity = 159/206 (77.18%), Postives = 176/206 (85.44%), Query Frame = 3
Query:   96 IGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKXVWTY 710
            +GCE   GSL PS+KREY+   K  EGKRPLYA+ FNF+D+RY++VFATVGGNRVT Y+CLE G  A LQ+YVDEDK+ESFYT+SWA + VDG P LVA G NGIIRVI+ + EKL KSFVGHGDSINEIRTQPLKPSL++SASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFHPSDI R ASCGMDNTVKIWSMK  W Y
Sbjct:   10 LGCEAAEGSLVPSRKREYKPCGKHTEGKRPLYAIGFNFMDARYYDVFATVGGNRVTTYRCLENGSFALLQAYVDEDKDESFYTLSWARDHVDGSPLLVAAGSNGIIRVINCATEKLAKSFVGHGDSINEIRTQPLKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIERFASCGMDNTVKIWSMKEFWLY 215          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: FIE1_MAIZE (Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.227e-73
Identity = 133/214 (62.15%), Postives = 161/214 (75.23%), Query Frame = 3
Query:   72 VRRMARTAIGCEPLVGSLTPSKKREYRVTNKLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKXVWTY 710
            V  + R  +GCE + G L PS+KREY+  +K   G  P+YA+ FNFID RY++VFA    N V +Y+CLE G    LQ+YVDEDK+ESFYT+SW  + VD  P LVA G N IIRVI+ + EKL KS VGHG SI+EIRT   KPSL++SASKDES+RLWNV TGICIL+FAGAGGHR++VLSVDFHP+++   ASCGMDNTVKIWSMK  W Y
Sbjct:   60 VNIVPRQGLGCEVVEGLLVPSRKREYKPNSKYTVGNHPIYAIGFNFIDMRYYDVFAIASCNSVIIYRCLENGGFGLLQNYVDEDKDESFYTLSWTIDQVDSSPLLVAAGSNRIIRVINCATEKLDKSLVGHGGSIHEIRTHASKPSLIISASKDESIRLWNVHTGICILVFAGAGGHRHDVLSVDFHPTEVGIFASCGMDNTVKIWSMKEFWIY 273          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EED_DANRE (Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.729e-38
Identity = 85/190 (44.74%), Postives = 120/190 (63.16%), Query Frame = 3
Query:  138 KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSM 692
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  +     P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS DF   D+   +I SCGMD+++K+W +
Sbjct:   81 KYSFKCVNSLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTFDCSSSHPLLAVAGSRGIIRIINHITMQCVKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADF---DLLGEKIMSCGMDHSLKLWRL 267          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EED_MOUSE (Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW 686
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W
Sbjct:   79 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLW 263          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EED_HUMAN (Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW 686
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W
Sbjct:   79 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLW 263          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EED_BOVIN (Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW 686
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W
Sbjct:   79 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLW 263          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EED_XENTR (Polycomb protein eed OS=Xenopus tropicalis GN=eed PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW 686
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W
Sbjct:   76 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLW 260          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EED_CHICK (Polycomb protein EED OS=Gallus gallus GN=EED PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  138 KREYRVTNKLQEGK-RPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW 686
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W
Sbjct:   84 KYSFKCVNSLKEDHGQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLW 268          
BLAST of FC875324 vs. ExPASy Swiss-Prot
Match: EEDB_XENLA (Polycomb protein eed-B OS=Xenopus laevis GN=eed-B PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.417e-37
Identity = 84/188 (44.68%), Postives = 120/188 (63.83%), Query Frame = 3
Query:  138 KREYRVTNKLQEG-KRPLYAVVFNFIDSRYFN-VFATVGGNRVTVYQCLEGGVIAALQSYVDEDKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIW 686
            K  ++  N L+E   +PL+ V FN+        VFATVG NRVT+Y+C   G I  LQSYVD D +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++  P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SCGMD+++K+W
Sbjct:   76 KYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHPQGDIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSCGMDHSLKLW 260          
The following BLAST results are available for this feature:
BLAST of FC875324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
FIE_ARATH2.809e-9474.76Polycomb group protein FERTILIZATION-INDEPENDENT E... [more]
FIE2_MAIZE6.062e-8977.18Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE... [more]
FIE1_MAIZE1.227e-7362.15Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE... [more]
EED_DANRE3.729e-3844.74Polycomb protein eed OS=Danio rerio GN=eed PE=2 SV... [more]
EED_MOUSE8.308e-3844.68Polycomb protein EED OS=Mus musculus GN=Eed PE=1 S... [more]
EED_HUMAN8.308e-3844.68Polycomb protein EED OS=Homo sapiens GN=EED PE=1 S... [more]
EED_BOVIN8.308e-3844.68Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=... [more]
EED_XENTR1.085e-3744.68Polycomb protein eed OS=Xenopus tropicalis GN=eed ... [more]
EED_CHICK1.085e-3744.68Polycomb protein EED OS=Gallus gallus GN=EED PE=2 ... [more]
EEDB_XENLA1.417e-3744.68Polycomb protein eed-B OS=Xenopus laevis GN=eed-B ... [more]

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Properties
Property NameValue
Genbank descriptionC31402F10EF CTVClemen1 Citrus clementina cDNA clone C31402F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875324 ID=FC875324; Name=FC875324; organism=Citrus clementina; type=EST; length=712bp
GATCCCCAGAATACATCGACGAAACGCTTCAGTGGTTTTCTTGCATAGGT
TACGCAGTGACGGGTGCTAACGTGCGCAGGATGGCGAGGACTGCGATCGG
CTGCGAGCCACTGGTAGGATCACTAACGCCGTCGAAAAAACGCGAGTACA
GAGTCACTAATAAGCTCCAAGAAGGCAAGCGTCCTTTGTACGCCGTCGTT
TTCAACTTCATCGACTCCCGCTACTTCAACGTCTTCGCCACCGTCGGTGG
AAATCGCGTAACTGTATACCAATGTCTTGAGGGGGGTGTTATTGCAGCAT
TGCAGTCTTATGTTGATGAAGATAAGGAAGAGTCATTTTATACTGTGAGC
TGGGCTTGCAATGTGGATGGGATCCCCTTCTTAGTGGCAGGAGGCATCAA
TGGTATCATCCGAGTAATTGATGTCAGTAATGAGAAACTTCACAAGAGTT
TTGTTGGCCATGGGGATTCAATAAATGAAATCAGGACCCAGCCACTGAAA
CCCTCACTTGTGGTGTCTGCAAGCAAAGATGAATCAGTTCGTCTCTGGAA
TGTGCAAACTGGAATATGCATTTTGATATTTGCTGGTGCTGGGGGTCACC
GTAATGAAGTTTTGAGCGTGGACTTTCATCCTTCAGATATCTATCGCATT
GCAAGTTGTGGCATGGACAACACTGTCAAGATTTGGTCAATGAAANGAGT
CTGGACATATGT
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