FC875325

Overview
NameFC875325
Unique NameFC875325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10207 contig Ccv1_Contig10207:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: CBWD2_HUMAN (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.969e-17
Identity = 45/87 (51.72%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  412 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKK 666
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE+GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ KK
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKK 127          

HSP 2 Score: 21.1718 bits (43), Expect = 4.969e-17
Identity = 7/11 (63.64%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  663 KEGKFDHIVIE 695
            K+GKFD+I++E
Sbjct:  126 KKGKFDYILLE 136          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: COBW_PSEAE (Protein cobW OS=Pseudomonas aeruginosa GN=cobW PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  412 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGAED------IVLLNNGCLCCTVRGDLVRMISELVSKKKGNSTIL 687
            ++P TI+TGFLG+GKTTLL H+L    G+RIAVI NE+GE+ IDG ++   + G  +      +  L NGCLCCTV+ +   ++ ELV+++     IL
Sbjct:   31 KLPVTIVTGFLGAGKTTLLRHMLDNAEGRRIAVIVNEFGELGIDGEILKQCSIGCSEEEAQGRVFELANGCLCCTVQEEFFPVMRELVARRGDLDQIL 128          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: CBWD1_HUMAN (COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.460e-17
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  412 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKK 666
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE+GE       +A    G   E+ + L NGCLCC+V+   +R I  L+ KK
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKK 127          

HSP 2 Score: 21.1718 bits (43), Expect = 6.460e-17
Identity = 7/11 (63.64%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  663 KEGKFDHIVIE 695
            K+GKFD+I++E
Sbjct:  126 KKGKFDYILLE 136          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: YJIA_ECOLI (Uncharacterized GTP-binding protein yjiA OS=Escherichia coli (strain K12) GN=yjiA PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  409 NRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGAEDIVLLNNGCLCCTVRGDLVRMISELVSK-KKGN 675
            N I  T++TGFLG+GKTTLL HIL  +HG +IAVIENE+GEV +D  L+  + T    I  L NGC+CC+   +L   + +L+    KGN
Sbjct:    2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRAT---QIKTLTNGCICCSRSNELEDALLDLLDNLDKGN 88          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: CBWD1_MOUSE (COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.092e-16
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  373 EDSDLLTKIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKK 666
            E+ D +TKIP       TI+TG+LG+GKTTLLN+ILT +H ++IAVI NE+GE       +A    G   E+ + L NGCLCC+V+   +R I  L+ KK
Sbjct:   32 ENLDFITKIP------VTIVTGYLGAGKTTLLNYILTEQHNRKIAVILNEFGEGSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKK 125          

HSP 2 Score: 21.1718 bits (43), Expect = 1.092e-16
Identity = 7/11 (63.64%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  663 KEGKFDHIVIE 695
            K+GKFD+I++E
Sbjct:  124 KKGKFDYILLE 134          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: Y4527_DICDI (COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  394 KIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLV----------AAKTTGAEDIVLLNNGCLCCTVRGDLVRMISELVSKKKGNSTIL 687
            K+    ++P ++++GFLGSGKTTLLN+IL + HG +IAVI N+  EV+ID  L+           A     E +V ++NGC+CCT+R DL+  +++L  +K+ +  I+
Sbjct:   36 KVRGFEKLPVSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMSEVNIDSKLILENEFKITRTKATEKQVEAVVEMSNGCICCTMREDLLVEVTKLAKEKRFDYLII 143          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: P47K_PSECL (47 kDa protein OS=Pseudomonas chlororaphis PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 39/89 (43.82%), Postives = 62/89 (69.66%), Query Frame = 1
Query:  412 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTT---GAEDIVLLNNGCLCCTVRGDLVRMISELVSKKK 669
            R+P T+++GFLG+GKTTLLN IL    G R+AVI N+  EV++D   V    +   G ++++ ++NGC+CCT+R DL+  IS+L  +++
Sbjct:    9 RLPVTVLSGFLGAGKTTLLNAILRNRQGLRVAVIVNDMSEVNLDAESVQRDVSLHRGRDELIEMSNGCICCTLRADLLEQISDLARQQR 97          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: COBW_PSEDE (Protein cobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 38/88 (43.18%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  412 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLV---AAKTTGAEDIVLLNNGCLCCTVRGDLVRMISELVSKK 666
            +IPAT+ITGFLG+GKTT++ ++L    GKRI +I NE+G++ +DG ++    A+    +DI+ L NGC+CCTV  D +  +++L+ ++
Sbjct:   10 KIPATVITGFLGAGKTTMIRNLLQNADGKRIGLIINEFGDLGVDGDVLKGCGAEACTEDDIIELTNGCICCTVADDFIPTMTKLLERE 97          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: CBWD6_HUMAN (COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  412 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKK 666
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ KK
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKK 127          
BLAST of FC875325 vs. ExPASy Swiss-Prot
Match: CBWD5_HUMAN (COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  412 RIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEYGEVDIDGSLVAAKTTGA--EDIVLLNNGCLCCTVRGDLVRMISELVSKK 666
            +IP TIITG+LG+GKTTLLN+ILT +H KR+AVI NE GE       +A    G   E+ + L NGCLCC+V+ + +R I  L+ KK
Sbjct:   41 KIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKK 127          
The following BLAST results are available for this feature:
BLAST of FC875325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CBWD2_HUMAN4.969e-1751.72COBW domain-containing protein 2 OS=Homo sapiens G... [more]
COBW_PSEAE5.065e-1744.90Protein cobW OS=Pseudomonas aeruginosa GN=cobW PE=... [more]
CBWD1_HUMAN6.460e-1751.72COBW domain-containing protein 1 OS=Homo sapiens G... [more]
YJIA_ECOLI8.640e-1748.89Uncharacterized GTP-binding protein yjiA OS=Escher... [more]
CBWD1_MOUSE1.092e-1647.00COBW domain-containing protein 1 OS=Mus musculus G... [more]
Y4527_DICDI1.128e-1639.81COBW domain-containing protein DDB_G0274527 OS=Dic... [more]
P47K_PSECL1.474e-1643.8247 kDa protein OS=Pseudomonas chlororaphis PE=3 SV... [more]
COBW_PSEDE1.474e-1643.18Protein cobW OS=Pseudomonas denitrificans GN=cobW ... [more]
CBWD6_HUMAN3.283e-1651.72COBW domain-containing protein 6 OS=Homo sapiens G... [more]
CBWD5_HUMAN3.283e-1651.72COBW domain-containing protein 5 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC31402F11EF CTVClemen1 Citrus clementina cDNA clone C31402F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875325 ID=FC875325; Name=FC875325; organism=Citrus clementina; type=EST; length=738bp
GGAGAACATTAAAGAGGCGAAAATATTACAATTCAATTGATTCGTCTCCC
TCCACTCTCTGAAATATCTAAAACCCCCAGCAAAAACCTCCATTATCCAA
TTCCAAAACACGAGCCGCGGTGAAAAACAAAAATGGCTTCTTCACTCTCA
ACAGAAATGGCCACCACCTTCCTCTCCTTCACCGCTCGCCCACAAAACCC
ATTTGCTAAAATCCGAACCACTGTTCTCCCCGTCCTCTTCAAACCCAGAG
CCCGAAACTTATCCTACAAAACGATGGCGTCCTCAACTCACTCCAAATTT
ATCGCCGTCAAAGTCCCCAGACCCTACCGCCGGTTCACGGCCTCTGCTTC
TGCCGCCGCCACTACTGCCAGCGAGGACTCTGACTTGTTGACAAAGATTC
CACCCGATAACAGAATTCCCGCCACCATAATCACCGGCTTTTTGGGTTCG
GGAAAGACGACATTGCTCAACCATATCTTGACTGCAGAACACGGGAAGCG
CATAGCTGTGATTGAGAACGAGTATGGTGAAGTGGACATTGATGGGTCGT
TAGTTGCTGCTAAAACTACTGGGGCTGAGGACATAGTTTTGCTTAACAAT
GGCTGTTTGTGCTGCACAGTAAGAGGTGATCTTGTGAGGATGATTTCAGA
ATTAGTCAGTAAAAAGAAGGGAAATTCGACCATATTGTAATTGAACTACA
GGATTGGCTAATCCGCACCATCATCAGACATTTTATGC
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