FC875327

Overview
NameFC875327
Unique NameFC875327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875327 vs. ExPASy Swiss-Prot
Match: BH051_ARATH (Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 64/130 (49.23%), Postives = 80/130 (61.54%), Query Frame = 1
Query:  253 DRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSEKMDKAALLGSAIEHVKDLKLKAMEVSKTLTIPTEVDEVTVECELFQAAEARAETEAGSSINKVKGDTLIKASVSCDDQPELYKEIIRVLKGLGL 642
            ++A ++S+SH  AEKRRRDRIN+ L  LRKL+P S+K+DKAALL + IE VK+LK KA E      +PTE DEVTV+ E     E+   T             + KAS  C+DQPE   EIIRVL  L L
Sbjct:   58 EKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESPIFQDLPTEADEVTVQPETISDFESNTNT------------IIFKASFCCEDQPEAISEIIRVLTKLQL 175          
BLAST of FC875327 vs. ExPASy Swiss-Prot
Match: BH032_ARATH (Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  238 QEVAEDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSEKMDKAALLGSAIEHVKDLKLKAMEVSKTLTIPTEVDEVTVECELFQAAEARAETEAGSSINKVKGDTLIKASVSCDDQPELYKEIIRVLKGLGL 642
            QEV + +A A SKSHS+AE+RRR+RIN  LA LR ++P + K DKA+LL   I+H+K+LK +  +++ T  +PTE D++TV+                SS N  +G+ +I+AS  C D+ +L  ++I  LK L L
Sbjct:  122 QEVMDAKALAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITDTYQVPTECDDLTVD----------------SSYNDEEGNLVIRASFCCQDRTDLMHDVINALKSLRL 240          
BLAST of FC875327 vs. ExPASy Swiss-Prot
Match: BH030_ARATH (Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.611e-22
Identity = 58/135 (42.96%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  238 QEVAEDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSEKMDKAALLGSAIEHVKDLKLKAMEVSKTLTIPTEVDEVTVECELFQAAEARAETEAGSSINKVKGDTLIKASVSCDDQPELYKEIIRVLKGLGL 642
            QE+ + +A A SKSHS+AE+RRR+RIN  LA LR ++P + K DKA+LL   I+HVK+LK +   +S+T  +PTE DE+TV            E E G       G  +IKAS+ C+D+ +L  ++I+ LK + L
Sbjct:  164 QEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVISETNLVPTESDELTV--------AFTEEEETGD------GRFVIKASLCCEDRSDLLPDMIKTLKAMRL 284          
BLAST of FC875327 vs. ExPASy Swiss-Prot
Match: BH107_ARATH (Putative transcription factor bHLH107 OS=Arabidopsis thaliana GN=BHLH107 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  244 VAEDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSEKMDKAALLGSAIEHVKDLKLKAMEVSKTLTIPTEVDEVTV----ECELFQAAEARAETEAGSSINKVKGD---TLIKASVSCDDQPELYKEIIRVLKGL 636
            V ED+A A  ++H +AE++RR RIN+ L  LRKL+  + K DK+ LL   ++ VK+LK + +E++   TIP+E DE++V    +C                     +GD    + K S  C+D+PEL K+++  LK L
Sbjct:   37 VYEDKALASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQTLEITDE-TIPSETDEISVLNIEDCS--------------------RGDDRRIIFKVSFCCEDRPELLKDLMETLKSL 153          
BLAST of FC875327 vs. ExPASy Swiss-Prot
Match: BH106_ARATH (Transcription factor bHLH106 OS=Arabidopsis thaliana GN=BHLH106 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 46/142 (32.39%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  223 INPMTQEVAEDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSEKMDKAALLGSAIEHVKDLKLKAMEVSKT--LTIPTEVDEVTVECELFQAAEARAETEAGSSINKVKGDTLIKASVSCDDQPELYKEIIRVLKGLGL 642
            I+ + + +A+DRA A  ++H +AE+RRR+RIN+ L  LR ++  + K DKA LL   ++ V++LK + +E S +    +P+E DE++V                G   N   G  + KAS+ C+D+ +L  +++ +LK L +
Sbjct:   52 ISGIGETMAQDRALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSDQTLLPSETDEISV-------------LHFGDYSN--DGHIIFKASLCCEDRSDLLPDLMEILKSLNM 178          
The following BLAST results are available for this feature:
BLAST of FC875327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BH051_ARATH2.061e-2449.23Transcription factor bHLH51 OS=Arabidopsis thalian... [more]
BH032_ARATH3.886e-2341.48Transcription factor AIG1 OS=Arabidopsis thaliana ... [more]
BH030_ARATH5.611e-2242.96Transcription factor bHLH30 OS=Arabidopsis thalian... [more]
BH107_ARATH2.982e-1535.51Putative transcription factor bHLH107 OS=Arabidops... [more]
BH106_ARATH2.982e-1532.39Transcription factor bHLH106 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC31402G01EF CTVClemen1 Citrus clementina cDNA clone C31402G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875327 ID=FC875327; Name=FC875327; organism=Citrus clementina; type=EST; length=663bp
GCAGTACGATTTTTTGTTGCATTGGCAATGGAAAACTTTAGTCATCAATC
TGCTACAGCCTGCCCTGATCAAATGAATTATTGGGCTGCTAATTCCAACT
TTCCACTCACATGGCTGCAGCAAACACCAGCACCCCATGTTAATTCATCA
GCTTCTACTTCAAATTCAAATTCAAATTCAATTGATCATCACTTTCACGA
GCTTCCTTATTCATGGTCAAATATTAATCCAATGACTCAAGAAGTCGCAG
AAGACAGAGCCACTGCTGTTTCAAAGAGCCACAGTCAAGCTGAAAAGCGG
CGCCGAGATAGAATTAATGCTCAGCTTGCAACTCTAAGGAAGCTAATCCC
CAAGTCCGAGAAGATGGACAAGGCAGCACTTTTGGGAAGTGCGATAGAGC
ATGTGAAGGACCTAAAGCTAAAAGCAATGGAAGTGAGCAAAACATTAACA
ATTCCAACGGAAGTTGATGAAGTAACTGTTGAGTGTGAGCTTTTCCAAGC
TGCAGAAGCACGGGCAGAAACAGAAGCAGGAAGCTCCATTAACAAAGTCA
AGGGGGATACTTTGATCAAAGCTTCTGTCAGCTGTGATGATCAGCCAGAA
TTGTACAAAGAAATCATAAGGGTGCTTAAGGGCCTCGGGCTAACACAGTG
AGAGCTGATATTT
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