FC875330

Overview
NameFC875330
Unique NameFC875330
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10208 contig Ccv1_Contig10208:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875330 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.357e-105
Identity = 185/201 (92.04%), Postives = 191/201 (95.02%), Query Frame = 1
Query:   94 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNDDMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLXSEELCKHYTKDFGIECRVGR 687
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKN+ MTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL +EELCKHYTKDFGIECRVGR
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGR 201          
BLAST of FC875330 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 2.162e-104
Identity = 184/201 (91.54%), Postives = 190/201 (94.53%), Query Frame = 1
Query:   94 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNDDMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLXSEELCKHYTKDFGIECRVGR 687
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKN+ MTEDMFCHEFHLVDLRVMDNCLKVT  VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL +EELCKHYTKDFGIECRVGR
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGR 201          
BLAST of FC875330 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 5.889e-102
Identity = 176/200 (88.00%), Postives = 190/200 (95.00%), Query Frame = 1
Query:   94 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNDDMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLE-TNVSLKESDAWPAEPQDAYGLEKLXSEELCKHYTKDFGIECRVGR 687
            MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKN+ MTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNM+EA+RI+G+KRFFYASSACIYPEFKQLE TNVSLKESDAWPAEPQDAYGLEKL +EELCKHY KDFGIECR+GR
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGR 200          
BLAST of FC875330 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 369.007 bits (946), Expect = 1.312e-101
Identity = 175/188 (93.09%), Postives = 182/188 (96.81%), Query Frame = 1
Query:  124 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNDDMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLXSEELCKHYTKDFGIECRVGR 687
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKN+ MTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQL+T VSLKESDAWPAEPQDAYGLEKL +EELCKHYTKDFGIECRVGR
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGR 194          
The following BLAST results are available for this feature:
BLAST of FC875330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ4.357e-10592.04GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI2.162e-10491.54GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH5.889e-10288.00GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ1.312e-10193.09GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionC31402G04EF CTVClemen1 Citrus clementina cDNA clone C31402G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875330 ID=FC875330; Name=FC875330; organism=Citrus clementina; type=EST; length=689bp
GATTCAATCTTTAATTCTTCCAAAGCCAGCCATTCTCCTCCTCCTTTATC
TTCTCCTCTTCATTAAACTCTCAAAGTTCAGGTGTTTTTCAGAATGGGAA
GTACTGAAGGAACCTATGGTGCATACACCTATGAGGAGCTTGAGAGGGAA
CCTTACTGGCCTTCCGAGAAGCTCCGAATTTCTGTCACTGGGGCAGGTGG
TTTTATTGCCTCCCACATTGCTCGGCGTCTGAAGAGTGAAGGCCATTACA
TTATTGCTTCTGACTGGAAGAAGAATGACGACATGACTGAGGATATGTTC
TGTCATGAATTCCACCTTGTTGACCTTAGGGTCATGGACAATTGCTTGAA
AGTTACTAAGGGGGTTGACCATGTGTTTAACCTTGCTGCTGATATGGGTG
GTATGGGCTTTATTCAGTCCAACCACTCTGTCATCATGTATAACAATACC
ATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAAAGAG
GTTTTTCTATGCCTCTAGTGCCTGCATCTATCCCGAATTTAAGCAGCTGG
AAACTAACGTAAGCTTGAAGGAGTCTGATGCCTGGCCCGCTGAGCCTCAA
GATGCTTATGGCTTGGAGAAGCTTGNCAGTGAGGAGTTGTGTAAGCACTA
CACGAAAGACTTTGGAATTGAGTGTCGTGTTGGAAGATT
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