FC875331

Overview
NameFC875331
Unique NameFC875331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14410 contig Ccv1_Contig14410:83..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E3_ARATH (Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.544e-86
Identity = 152/205 (74.15%), Postives = 175/205 (85.37%), Query Frame = 2
Query:   44 MEITDKKESDINNTQTVADSVDNN---NKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYSP 649
            ME+ D+++ +I ++  + DS+ ++   +  +EER++RELK   HPL+ KF  WYTRRTPGVR Q SYEDNIKK+V+FSTVEGFW CYCHLAR SLLPSPTDLH FK+GIRPLWED ANCNGGKWIIRF KVVS RFWEDL+LALVGDQLD  DNICGAVLS+RFNEDI+SVWNRNASDHQAVM LRDSIKRHLKLPH+YVMEY P
Sbjct:    1 MEVLDRRDDEIRDSGNM-DSIKSHYVTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPGVRNQ-SYEDNIKKMVEFSTVEGFWACYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSARFWEDLLLALVGDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMGLRDSIKRHLKLPHAYVMEYKP 203          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E2_HUMAN (Eukaryotic translation initiation factor 4E type 2 OS=Homo sapiens GN=EIF4E2 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.773e-50
Identity = 94/200 (47.00%), Postives = 135/200 (67.50%), Query Frame = 2
Query:   56 DKKESDINNTQTVADSVD---NNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            D  +++ N+TQ   +      + N+ + +R+A       HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD      +RD+++R L LP + +MEY
Sbjct:   15 DHDQNEENSTQKDGEKEKTERDKNQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEY 214          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E2_MOUSE (Eukaryotic translation initiation factor 4E type 2 OS=Mus musculus GN=Eif4e2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.362e-49
Identity = 93/200 (46.50%), Postives = 134/200 (67.00%), Query Frame = 2
Query:   56 DKKESDINNTQTVADSVDNNNKDAE---ERQARELKANLHPLKNKFVFWYTRRTPGVRTQT-SYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            D  +++ N+TQ   +    +   ++   +R+A       HPL+  + FWY+RRTPG  T + SYE NIK+I  F++VE FW  Y H+ RP  L   +D HLFKEGI+P+WED AN NGGKWIIR +K ++ R WE+L+LA++G+Q   G+ ICGAV+S+RF EDI+S+WN+ ASD      +RD+++R L LP + +MEY
Sbjct:   15 DHDQNEENSTQKDGEKEKTDRDKSQSSGKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWKFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEY 214          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E4_CAEEL (Eukaryotic translation initiation factor 4E-4 OS=Caenorhabditis elegans GN=ife-4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            H L+  + F Y  R  G      Y   ++ +    +VE FW    H  RP+ +    D+H FK G++P+WED ANC GGKWIIR KK +S R WE+L++A++G+Q   GD +CGAV SIR  EDI+S+WNRNA D      +R++++  L+LP + V+EY
Sbjct:   31 HQLQYSYTFSYFMRPTGKFDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLSTRIWENLLMAIIGEQFLVGDELCGAVCSIRNQEDIISLWNRNADDTPVTNRIRETLRSVLQLPQNTVLEY 190          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E1_ARATH (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 62/156 (39.74%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRT-QTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHS 628
            HPL++ + FW+    P V++ QTS+  +++ +  FSTVE FW  Y ++  PS L    D + FK  I P WED    NGGKW + F K  S + W   +LAL+G+Q D+GD ICGAV++IR  ++ +S+W +NAS+  A +++    K  L   +S
Sbjct:   60 HPLEHSWTFWFDN--PAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAVVNIRGKQERISIWTKNASNEAAQVSIGKQWKEFLDYNNS 213          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_DICDI (Eukaryotic translation initiation factor 4E OS=Dictyostelium discoideum GN=eif4e PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 71/211 (33.65%), Postives = 113/211 (53.55%), Query Frame = 2
Query:   50 ITDKKESDINNTQTV-ADSVDNNNKDA-------EERQARELKANL--HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFK-KVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYSP 649
            +T +  +  NNTQ    ++ DN NK+        EE+Q  E   NL  HPL+N++  WY  ++  +  +  + D++KK++ F +VE FW  + +L   S L   +  HLFK+ I P WE  +N  GGKW +  K K      W   V+A VG+  D  D ICG V + R N D +SVW + A D +A   + + +K+ L++  +  ++Y+P
Sbjct:   26 VTSETTTTTNNTQNKETETTDNINKEETADKENKEEQQQEENPENLIKHPLQNRWSLWYDYQSGKINPE-HWVDSLKKVISFDSVEDFWCVFNNLPNVSNLKQGSSYHLFKDDIEPKWEHESNKRGGKWFVMVKDKSRCDNQWLQSVMACVGETFDSSDEICGIVYNSRKNGDKISVWTKTAQDEKATRDVGNCLKKILEIDQT--IQYTP 233          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E1_WHEAT (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.769e-27
Identity = 64/174 (36.78%), Postives = 93/174 (53.45%), Query Frame = 2
Query:   92 VADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHL 613
            +AD  D ++  A  R         HPL+N + FW+     G   Q ++   I  I  FSTVE FW  Y ++  PS L    D H FK  I P WED    NGGKW I   +  S  FW   +LA++G+Q D+GD ICGAV+S+R  ++ +++W +NA++  A +++    K  L
Sbjct:   22 IADDGDGSSAAAAGR------ITAHPLENAWTFWFDN-PQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMIGEQFDFGDEICGAVVSVRQKQERVAIWTKNAANEAAQISIGKQWKEFL 188          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E_DROME (Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.617e-27
Identity = 63/198 (31.82%), Postives = 100/198 (50.51%), Query Frame = 2
Query:   59 KKESDINNTQTVADSVDNNNKDAEERQARELKANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWII---RFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            K + D   T   A +       A +   R      HPL N +  WY           S+ED   +I  F TVE FW  Y H+  PS +   +D  LFK+ IRP+WED+AN  GG+W+I   +  K      W D++L L+G+  D+ D ICGAV++IR   + +S+W  + ++ +A + +   ++  L+L  +  ++Y
Sbjct:   46 KPKEDPQETGEPAGNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLEND----RSKSWEDMQNEITSFDTVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITLNKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTADGNNEEAALEIGHKLRDALRLGRNNSLQY 239          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E3_CAEEL (Eukaryotic translation initiation factor 4E-3 OS=Caenorhabditis elegans GN=ife-3 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.169e-27
Identity = 59/165 (35.76%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  164 HPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKK----VVSGRFWEDLVLALVGDQLD-YGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEY 643
            HPL+N++  WY +          +ED +K +  F TVE FW  Y H+     L   +D +LFKEGI+P+WED  N  GG+W++   K     +   +W +L++A+VG+Q D YGD ICGAV+++R   D +S+W R+A+     + +   +K+ L +P + ++ Y
Sbjct:   32 HPLQNRWALWYLKAD----RNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDEYGDYICGAVVNVRQKGDKVSLWTRDATRDDVNLRIGQVLKQKLSIPDTEILRY 192          
BLAST of FC875331 vs. ExPASy Swiss-Prot
Match: IF4E1_ORYSJ (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 63/177 (35.59%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  122 DAEERQARELK-------------ANLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSLLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHL 613
            DA+ER+  E+              A  HPL++ + FW+     G   Q ++  +I+ I  FSTVE FW  Y ++  PS L    D H FK  I P WED    NGGKW     +  S   W   +LA++G+Q DYGD ICGAV+S+R  ++ +++W +NA++  A +++    K  L
Sbjct:   25 DADEREEGEIADDDSGHAPPQANPAAPHPLEHAWTFWFDN-PQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERIAIWTKNAANEAAQISIGKQWKEFL 200          
The following BLAST results are available for this feature:
BLAST of FC875331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF4E3_ARATH1.544e-8674.15Eukaryotic translation initiation factor 4E type 3... [more]
IF4E2_HUMAN6.773e-5047.00Eukaryotic translation initiation factor 4E type 2... [more]
IF4E2_MOUSE3.362e-4946.50Eukaryotic translation initiation factor 4E type 2... [more]
IF4E4_CAEEL1.465e-3643.13Eukaryotic translation initiation factor 4E-4 OS=C... [more]
IF4E1_ARATH1.468e-2839.74Eukaryotic translation initiation factor 4E-1 OS=A... [more]
IF4E_DICDI1.243e-2733.65Eukaryotic translation initiation factor 4E OS=Dic... [more]
IF4E1_WHEAT2.769e-2736.78Eukaryotic translation initiation factor 4E-1 OS=T... [more]
IF4E_DROME3.617e-2731.82Eukaryotic translation initiation factor 4E OS=Dro... [more]
IF4E3_CAEEL6.169e-2735.76Eukaryotic translation initiation factor 4E-3 OS=C... [more]
IF4E1_ORYSJ1.052e-2635.59Eukaryotic translation initiation factor 4E-1 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionC31402G05EF CTVClemen1 Citrus clementina cDNA clone C31402G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875331 ID=FC875331; Name=FC875331; organism=Citrus clementina; type=EST; length=687bp
GAAAGAAGAACAAAATTTAAAAAAAGAAAAAGAAAATCAATAAATGGAAA
TAACAGATAAGAAGGAATCCGATATCAATAACACACAAACAGTCGCCGAT
TCCGTCGATAACAATAACAAAGACGCCGAAGAACGCCAAGCTCGTGAACT
TAAAGCCAATTTGCATCCTCTTAAGAACAAGTTTGTCTTTTGGTACACTC
GTCGAACACCCGGAGTTCGAACTCAAACATCGTACGAGGACAACATAAAG
AAAATTGTGGACTTCAGTACTGTTGAAGGTTTTTGGGTCTGCTATTGCCA
CTTGGCTCGTCCTTCTTTGTTGCCAAGCCCTACAGATTTGCATCTTTTCA
AGGAAGGAATTCGCCCATTATGGGAGGACTCTGCAAATTGCAATGGCGGT
AAATGGATAATAAGGTTCAAGAAAGTTGTATCAGGTCGCTTTTGGGAAGA
TCTGGTTCTTGCCTTGGTGGGTGACCAGCTTGACTATGGTGATAACATAT
GTGGTGCAGTCCTAAGCATTCGATTCAATGAAGATATATTGAGTGTGTGG
AACCGCAATGCATCTGATCATCAGGCTGTGATGGCTCTTAGAGATTCTAT
CAAACGGCACTTAAAGCTTCCCCACAGCTATGTTATGGAATACAGCCCCA
TGATGCTTCTCTGCGCGATACTCGTCATACAGAACAC
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