FC875332

Overview
NameFC875332
Unique NameFC875332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.569e-40
Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  200 GVDLLNNPDLVATDS----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.968e-40
Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G++LLNNPDL+ATN     V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  216 GQNLLNNPDLVATN----AVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.968e-40
Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     V+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  211 GVDLLNNPDLVATDP----VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.794e-40
Identity = 71/123 (57.72%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     ++SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  198 GVDLLNNPDLVATDS----IISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.018e-39
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  200 GVDLLNNPDLVATDS----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.268e-39
Identity = 73/123 (59.35%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     V+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A RLPG+G+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  206 GVDLLNNPDLVATDP----VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.962e-39
Identity = 72/123 (58.54%), Postives = 91/123 (73.98%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  D  A R+PG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  204 GVDLLNNPDLVATDP----VISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.470e-38
Identity = 71/120 (59.17%), Postives = 91/120 (75.83%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMA 362
            GEDLLNNP+L+A++     V+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG+G +D V NRIGF+  +C   GI  G NLDC +QRP+   L A
Sbjct:  217 GEDLLNNPELVASDP----VVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.586e-38
Identity = 74/123 (60.16%), Postives = 91/123 (73.98%), Query Frame = 3
Query:    3 GEDLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 371
            G DLLNNPDL+AT+     V+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  AGRLPGYG  TNIINGG+ECG G +  V++RIGF+  +C  FGI  GDNLDC +QRP+G +L   S+
Sbjct:  198 GVDLLNNPDLVATDP----VISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of FC875332 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.295e-38
Identity = 69/113 (61.06%), Postives = 87/113 (76.99%), Query Frame = 3
Query:    9 DLLNNPDLLATNDKEGRVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 347
            +LL NPDL+AT+    RVLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG G N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  135 NLLGNPDLVATD----RVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
The following BLAST results are available for this feature:
BLAST of FC875332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CHI1_SOLTU4.569e-4059.35Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC5.968e-4059.35Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_TOBAC5.968e-4060.16Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI2_SOLTU7.794e-4057.72Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU1.018e-3958.54Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_TOBAC2.268e-3959.35Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIC_SOLLC2.962e-3958.54Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI9_ORYSJ1.470e-3859.17Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_PEA5.586e-3860.16Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_CARPA7.295e-3861.06Endochitinase OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31402G06EF CTVClemen1 Citrus clementina cDNA clone C31402G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875332 ID=FC875332; Name=FC875332; organism=Citrus clementina; type=EST; length=666bp
GAGGAGAGGACTTGTTGAACAATCCAGACCTTCTTGCTACTAATGATAAA
GAAGGACGAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGC
ACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAAC
CATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACC
ACAAATATAATCAACGGTGGAATTGAATGTGGCTACGGTGGGAATGACGC
TGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGA
TTCAGCCTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTT
AATCTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAA
TAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAG
GTGGACAACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACT
GATCCAACATGGATCAATGAGTCTTCTCCATCTTTCATCGTTTGATTATT
TTTTTGAGTTTTTTTGTTAAAATTTTGTACGTTTGTGGTTAGTTATTTTA
ACAAAATAATTAGTCGAGAAAGGTAAATGTTTTGGGGGTGAGAAATACCA
CGATCAGGCACACATG
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