FC875334

Overview
NameFC875334
Unique NameFC875334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10209 contig Ccv1_Contig10209:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT61_ARATH (VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 7.867e-92
Identity = 164/197 (83.25%), Postives = 180/197 (91.37%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCCT 722
            MKITALLVLKC P+ SDPV+L+ A DVSHFGYFQRSSVKEF++F  RTV  RTPP QRQSVQHEEYKVH+YNRNGLCA+GFMDDHYPVRS+FSLLNQVLDEYQK+FGESWR+A+ D+ QPWPYL EALNK+QDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS ASQMF +Q ++  SCCT
Sbjct:    1 MKITALLVLKCAPEASDPVILSNASDVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQPWPYLTEALNKFQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAKKTNSCCT 197          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT62_ARATH (VAMP-like protein YKT62 OS=Arabidopsis thaliana GN=YKT62 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.191e-77
Identity = 144/199 (72.36%), Postives = 171/199 (85.93%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQ--RSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCCT 722
            MKITALLVLKC+P+  +PV+LA   D+S FG F   RS+ +EFI+F ARTV +RTPPGQRQSV+HEEYKVH+YN NGLCA+GFMDDHYPVRS+FSLLNQVLD YQK++G++WR    ++ QPWPYL EA +K++DPAEADKLLKIQRELDETKIILHKTID VLARGEKLDSLVEKSS+LS AS+MF +Q ++  SCCT
Sbjct:    1 MKITALLVLKCDPETREPVILANVSDLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQRQSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQKDYGDTWRF--ENSSQPWPYLKEASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSELSLASKMFYKQAKKTNSCCT 197          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.377e-42
Identity = 93/199 (46.73%), Postives = 136/199 (68.34%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCC 719
            MK+ ++ +L+ +P    PV +L TA D+S F +FQRSS+ EF+ F  +TV +RT PGQRQ V+   Y  H YNR+ GLC +   D  YP+R +++LLN++LDE+  KN    W +        +P L+  L+KYQDP +AD ++++Q+ELDETK +LHKTI+SVLARGEKLD L+++S +LS  S+MF +  ++  SCC
Sbjct:    1 MKLYSVSILRFDPK---PVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVT--LSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAKKQNSCC 194          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_ASHGO (Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.274e-41
Identity = 94/199 (47.24%), Postives = 135/199 (67.84%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRT-AQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCC 719
            MKI ++ +L+ +  G+  + L +A D+S FG+F+R+ V +F+ F   TV  RT  GQRQS++   Y  H Y+R+ GLC +   D  YPVR +++LLN+VLDEY      + WR  AQ  +      L   L KYQDP++AD ++++Q+ELDETKI+LHKTI+SVL RGEKLD+LV+KS  LSA+S+MF +Q ++  SCC
Sbjct:    1 MKIYSIAILRNS--GNKALELCSAKDLSQFGFFERNGVSQFMTFFGETVAGRTGAGQRQSIEEGNYVGHVYSRSEGLCGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPAEWRDIAQTSDQLKLRELEMYLAKYQDPSQADSIMRVQQELDETKIVLHKTIESVLQRGEKLDNLVDKSESLSASSRMFYKQAKKTNSCC 197          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_CANGA (Synaptobrevin homolog YKT6 OS=Candida glabrata GN=YKT6 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.137e-40
Identity = 88/179 (49.16%), Postives = 125/179 (69.83%), Query Frame = 3
Query:  195 LATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCC 719
            L    D+S FG+F+R+SV +F+ F A TV  RT  GQRQSV+   Y  H Y R+ G+C +   D  YPVR +++LLN+VLDEY   +  + W++  A N       L+  ++KYQDPA+AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MF +Q ++  SCC
Sbjct:   24 LTEVKDLSQFGFFERNSVGQFMTFFAETVATRTTAGQRQSVEEGNYIGHVYARSEGICGVLITDKDYPVRPAYTLLNKVLDEYLVAHPADQWKSITATNDSLKMAELSTYISKYQDPAQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKTNSCC 202          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_YEAST (Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae GN=YKT6 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.097e-40
Identity = 86/185 (46.49%), Postives = 128/185 (69.19%), Query Frame = 3
Query:  177 GSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCC 719
            G   + L+   D+S FG+F+RSSV +F+ F A TV  RT  GQRQS++   Y  H Y R+ G+C +   D  YPVR +++LLN++LDEY   +  E W    + ++      L+  ++KYQDP++AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MF +Q +++ SCC
Sbjct:   13 GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKSNSCC 197          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_YARLI (Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica GN=YKT6 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.127e-40
Identity = 91/199 (45.73%), Postives = 137/199 (68.84%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTA-QADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCC 719
            MK+  + +L+  P+  + V LA+A D+S + +F+RS+V +   F A TV  RT PGQRQSV+  +Y  H+Y R+ GL  +   D  YPVR +++LLN+VL+EY  K+    W  A +A +    P L + + +YQDP +AD ++++Q+ELDETKI+LHKTI+SVLARGE+LD+LV+KS  LS +S++F +Q ++  SCC
Sbjct:    1 MKLYYIGILR--PNKPEAVQLASASDLSSYSWFERSTVGQAFTFLAETVIPRTEPGQRQSVEENDYVGHAYLRSDGLGGVIITDQEYPVRVAYTLLNKVLEEYLTKHPKAEWENAKEASSKLAMPELEDYVKRYQDPHQADAIMRVQQELDETKIVLHKTIESVLARGERLDTLVDKSEALSQSSKIFFKQAKKTNSCC 197          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_DEBHA (Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.557e-39
Identity = 88/199 (44.22%), Postives = 131/199 (65.83%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCC 719
            MKI  + +L+    G   + L +A D+S F +F+R+ V +F+ F + TV +RT  GQRQS++   Y  H+Y R+ GL  +   D  YPVR +++L+N++L+EY     +  W    A N    +  L   + KYQDP++AD ++K+Q+ELDETKI+LHKTI+SVL RGEKLDSLV+KS  LS++S+MF +Q ++  SCC
Sbjct:    1 MKIYYIGILRIG--GEKALELTSARDLSQFSFFERNGVSQFMTFFSETVSQRTQAGQRQSIEEGNYIGHTYTRSEGLACVIITDKEYPVRPAYTLINKILEEYLSLHPQKDWANISATNASFNYDNLEHYIKKYQDPSQADSIMKVQQELDETKIVLHKTIESVLQRGEKLDSLVDKSEALSSSSRMFYKQAKKTNSCC 197          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_KLULA (Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis GN=YKT6 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.655e-39
Identity = 92/199 (46.23%), Postives = 134/199 (67.34%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQ-QRN*SCC 719
            MKI  + VL+ + D +  + L++  D+S FG+F+R+SV +F+ F + TV  RT  GQRQSV+   Y  H Y R  G+C +   D  YPVR +++LLN+VLDEY        W+   ++D+      L+  + KYQDP++AD ++++Q+ELDETKI LHKTI++VL RGEKLD+LV+KS  LSAAS+MF +Q ++  SCC
Sbjct:    1 MKIYYIGVLRNSDDKT--LELSSVKDLSQFGFFERNSVAQFMSFFSETVAGRTSAGQRQSVEEGNYVGHVYARPEGICGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPIQWKDVTESDDSLKLKELDIYIAKYQDPSQADAIMRVQQELDETKITLHKTIENVLQRGEKLDNLVDKSESLSAASRMFYKQAKKTNSCC 197          
BLAST of FC875334 vs. ExPASy Swiss-Prot
Match: YKT6_BOVIN (Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.781e-35
Identity = 89/198 (44.95%), Postives = 121/198 (61.11%), Query Frame = 3
Query:  135 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFAARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFLQQQR-N*SCC 719
            MK+ +L VL      S  V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R +F+LL +VLDE+ K      W T   D ++ +  L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ F +  R   SCC
Sbjct:    1 MKLYSLSVLYKGE--SKTVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPTGSPDTIR-YSGLDSQLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGIQSKAFYKTARKQNSCC 195          
The following BLAST results are available for this feature:
BLAST of FC875334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YKT61_ARATH7.867e-9283.25VAMP-like protein YKT61 OS=Arabidopsis thaliana GN... [more]
YKT62_ARATH4.191e-7772.36VAMP-like protein YKT62 OS=Arabidopsis thaliana GN... [more]
YKT6_SCHPO4.377e-4246.73Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
YKT6_ASHGO1.274e-4147.24Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=Y... [more]
YKT6_CANGA3.137e-4049.16Synaptobrevin homolog YKT6 OS=Candida glabrata GN=... [more]
YKT6_YEAST4.097e-4046.49Synaptobrevin homolog YKT6 OS=Saccharomyces cerevi... [more]
YKT6_YARLI9.127e-4045.73Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica ... [more]
YKT6_DEBHA1.557e-3944.22Synaptobrevin homolog YKT6 OS=Debaryomyces hanseni... [more]
YKT6_KLULA2.655e-3946.23Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis... [more]
YKT6_BOVIN1.781e-3544.95Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31402G08EF CTVClemen1 Citrus clementina cDNA clone C31402G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875334 ID=FC875334; Name=FC875334; organism=Citrus clementina; type=EST; length=727bp
GACTATGTGTCTCCTATCCGAATAATCAAAGCTCGATCAAAAAAAACATA
AAAACAATTTTTATTTTTTTCTCTTTTCAAAAACCAAACGACGCCGAATC
AGACGAACCGAACAACTTTCACAGCAGGAGGAGGATGAAGATCACGGCGT
TACTGGTTTTGAAGTGCAACCCGGACGGATCGGATCCGGTTGTGTTAGCG
ACCGCCATGGACGTTAGCCATTTCGGTTACTTTCAACGATCCAGCGTTAA
GGAGTTCATCCTCTTCGCCGCTCGCACTGTCGGTAAACGGACTCCGCCCG
GCCAGCGCCAGTCCGTCCAACACGAAGAGTACAAGGTGCATTCTTATAAC
AGGAATGGACTTTGCGCAATGGGATTCATGGATGATCATTATCCAGTGCG
AAGCTCATTCTCTCTTCTCAACCAGGTGCTAGATGAGTATCAGAAAAATT
TTGGTGAATCATGGAGGACTGCACAGGCAGACAACATGCAACCGTGGCCT
TATCTAAATGAAGCTTTGAACAAATATCAGGACCCAGCGGAGGCTGATAA
GCTGTTGAAAATTCAGAGGGAATTGGATGAAACAAAGATTATCCTTCATA
AAACTATCGATAGTGTACTTGCACGGGGTGAAAAGCTGGACAGTTTAGTT
GAGAAGAGTTCAGATCTCAGTGCAGCTTCGCAGATGTTTCTACAGCAGCA
AAGAAACTAATCATGTTGTACATACTG
back to top