FC875343

Overview
NameFC875343
Unique NameFC875343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2979 contig Ccv1_Contig2979:25..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 7.290e-88
Identity = 161/213 (75.59%), Postives = 180/213 (84.51%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCCL 641
            IWPNTKYLDVIVTGAMAQYIP L+YYSGG LPMACTMYASSE YFG+NL P+C+PSEVSYTIMPNMAYFEFLP        + +   + V+L DVEVGKEY+LVITTYAGL RYRVGDIL+VTGF+NSAPQF FVRRKNVLLSIESDKTDEA+LQ+A++NAS LL E  T V EYT  A TKTIPGHYVIYWELL+KD  N PN+EV+ +CCL
Sbjct:  302 IWPNTKYLDVIVTGAMAQYIPMLEYYSGG-LPMACTMYASSESYFGINLKPMCKPSEVSYTIMPNMAYFEFLPHHE-----VPTEKSELVELADVEVGKEYELVITTYAGLNRYRVGDILQVTGFYNSAPQFKFVRRKNVLLSIESDKTDEAELQSAVENASLLLGEQGTRVIEYTSYAETKTIPGHYVIYWELLVKDQTNPPNDEVMARCCL 508          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 8.060e-87
Identity = 158/214 (73.83%), Postives = 181/214 (84.58%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLL-REFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCCL 641
            IWPNTKYLDVIVTGAMAQYIPTL+YYSGG LPMACTMYASSECYFGLNLNP+ +PSEVSYTIMPNMAYFEF+P       G T +    V+LVDV +GKEY+LV+TTYAGL RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSI+SDKTDE++LQ A++NAS +L  E  + V EYT  A+T TIPGHYV+YWELL++D A  P++E L +CCL
Sbjct:  300 IWPNTKYLDVIVTGAMAQYIPTLEYYSGG-LPMACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFIP------LGGTKA----VELVDVNIGKEYELVVTTYAGLCRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASSILHEECGSRVAEYTSYADTSTIPGHYVLYWELLVRDGARQPSHETLTRCCL 502          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.593e-85
Identity = 158/214 (73.83%), Postives = 181/214 (84.58%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANS-PNNEVLNQCCL 641
            IWPNTKYLDVIVTGAMA+YIP L+YYSGG LPMA  +YASSE YFG+NLNP+C+PSEVSYTI PNMAYFEFLP       G+ ++    V+L DVEVGKEY+LVITTYAGLYRYRVGDILRVTGFHNSAPQF F+RR+NVLLSIESDKTDEA LQ A++NASRLL E  T V EYT  A+TKTIPGHYVIYWELL +D +N+ P++EV+ +CCL
Sbjct:  300 IWPNTKYLDVIVTGAMAEYIPMLEYYSGG-LPMASMIYASSESYFGINLNPMCKPSEVSYTIFPNMAYFEFLPHNHDGDGGVEATSL--VELADVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRENVLLSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSYADTKTIPGHYVIYWELLSRDQSNALPSDEVMAKCCL 510          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 2.593e-85
Identity = 159/216 (73.61%), Postives = 179/216 (82.87%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSS--DPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANS-PNNEVLNQCCL 641
            IWPNTKYLDVIVTGAMAQYIPTL+YYSGG LPMACTMYASSE YFG+NL P+C+PSEVSYTIMPNMAYFEFLP          +S  +   V+L +VEVGKEY+LVITTYAGLYRYRVGDILRVTGFHNSAPQF F+RRKNVLLS+ESDKTDEA+LQ A++NASRL  E  T   EYT  A TKTIPGHYVIYWELL +D +N+  + EV+ +CCL
Sbjct:  302 IWPNTKYLDVIVTGAMAQYIPTLEYYSGG-LPMACTMYASSESYFGINLKPMCKPSEVSYTIMPNMAYFEFLPHNHDGDGAAEASLDETSLVELANVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSVESDKTDEAELQKAVENASRLFAEQGTRGIEYTSYAETKTIPGHYVIYWELLGRDQSNALMSEEVMAKCCL 516          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.683e-82
Identity = 157/215 (73.02%), Postives = 174/215 (80.93%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDP-QPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDS-ANSPNNEVLNQCCL 641
            +WPNTKYLDVIVTGAMAQYIPTL++YSGG LPMACTMYASSECYFGLNL P+C PSEVSYTIMPNM YFEFLP +     G  S D  Q VDL  VEVG+EY+LVITTYAGL RYRVGD+LRVTGFHN+APQF FVRRKNVLLSIESDKTDEA+LQ A++ AS LLR    +V EYT  A TK IPGHYVIYWELL K + A   + + L +CCL
Sbjct:  307 VWPNTKYLDVIVTGAMAQYIPTLEFYSGG-LPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFEFLPVDET---GAASGDATQLVDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGASVVEYTSQACTKRIPGHYVIYWELLTKGAGATVVDADTLGRCCL 517          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 2.683e-82
Identity = 157/215 (73.02%), Postives = 174/215 (80.93%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDP-QPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDS-ANSPNNEVLNQCCL 641
            +WPNTKYLDVIVTGAMAQYIPTL++YSGG LPMACTMYASSECYFGLNL P+C PSEVSYTIMPNM YFEFLP +     G  S D  Q VDL  VEVG+EY+LVITTYAGL RYRVGD+LRVTGFHN+APQF FVRRKNVLLSIESDKTDEA+LQ A++ AS LLR    +V EYT  A TK IPGHYVIYWELL K + A   + + L +CCL
Sbjct:  307 VWPNTKYLDVIVTGAMAQYIPTLEFYSGG-LPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFEFLPVDET---GAASGDATQLVDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGASVVEYTSQACTKRIPGHYVIYWELLTKGAGATVVDADTLGRCCL 517          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.280e-80
Identity = 147/220 (66.82%), Postives = 172/220 (78.18%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEP-AHSFGLTSSDPQPVDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDS------ANSPNNEVLNQCCL 641
            +WPNTKYLDVIVTGAMAQYIPTL +YSGG LPMACTMYASSECYFGLNL P+C PSEVSYTIMPNM YFE +P +P A      +  P+ VDL D EVG+EY+LVITTYAGL RYRVGDIL+VTGFHN+APQF FVRRKNVLLSI+SDKTDEA+LQ A++ AS LL  +  ++ EYT  A+  TIPGHYV+YWEL++++       A      V  +CCL
Sbjct:  311 MWPNTKYLDVIVTGAMAQYIPTLKFYSGG-LPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFELMPHDPDAPPLPRDAPPPRLVDLADAEVGREYELVITTYAGLCRYRVGDILQVTGFHNAAPQFRFVRRKNVLLSIDSDKTDEAELQAAVERASALLSPYGASIVEYTSQADATTIPGHYVVYWELMVREGGAWPPPAEEEGRGVFERCCL 529          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 9.243e-75
Identity = 138/224 (61.61%), Postives = 171/224 (76.34%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQP-----------VDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCCL 641
            +WPNTKY+DVIVTG M+QYIPTLDYYS G LP+ CTMYASSECYFG+NL P+C+PSEVSYT++PNMAYFEFLP     + G+TSS   P           VDLVDV++G+EY+LV+TTYAGLYRYRVGD+L V GF N+APQF F+ RKNV+LSI+SDKTDE +LQNA+ NA   L  F+ ++ EYT  A+T +IPGHYV++WEL +  +   P + V   CCL
Sbjct:  302 LWPNTKYVDVIVTGTMSQYIPTLDYYSNG-LPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPNMAYFEFLPVH--RNSGVTSSISLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLNGNTPIPPS-VFEDCCL 521          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 5.991e-74
Identity = 138/225 (61.33%), Postives = 172/225 (76.44%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQP-----------VDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANTKTIPGHYVIYWELLIKDSANSPNNEVLNQCCLA 644
            +WPNTKY+DVIVTG M+QYIPTLDYYS G LP+ CTMYASSECYFG+NL P+C+PSEVSYT++P+MAYFEFLP     + G+T+S   P           VDLVDV++G+EY+LV+TTYAGL RYRVGD+LRVTGF N APQF F+ RKNV+LSI+SDKTDE +LQNA+ NA   L  F+ ++ EYT  A+T +IPGHYV++WEL +  +   P + V   CCLA
Sbjct:  302 LWPNTKYVDVIVTGTMSQYIPTLDYYSNG-LPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPSMAYFEFLPVH--RNNGVTNSINLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLDGNTPIPPS-VFEDCCLA 522          
BLAST of FC875343 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.632e-71
Identity = 135/220 (61.36%), Postives = 165/220 (75.00%), Query Frame = 3
Query:    3 IWPNTKYLDVIVTGAMAQYIPTLDYYSGGKLPMACTMYASSECYFGLNLNPICRPSEVSYTIMPNMAYFEFLPQEPAHSFGLTSSDPQP-----VDLVDVEVGKEYQLVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIESDKTDEAKLQNAIDNASRLLREFNTNVGEYTICANT-KTIPGHYVIYWELLIKDSANSPNNEVLNQCCLA 644
            +WP+TKY+DVIVTGAMAQYIPTL++Y GG LP+ACTMYASSECYFGLNLNP+C+PSEV+YT++P M YFEFLP    +S     + P+P     VDLVDV++G EY+LV+TTY+GLYRYRVGD+LRV GF N+AP F FVRRKNV LSI+SDKTDEA+L  A+  A + L  F  ++ EYT  A+T  TIPGHYV++WEL            V   CCLA
Sbjct:  307 VWPSTKYIDVIVTGAMAQYIPTLEFYGGG-LPLACTMYASSECYFGLNLNPMCKPSEVAYTLIPTMCYFEFLP---VNSGANDVAAPEPDHRGLVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNAAPMFAFVRRKNVALSIDSDKTDEAELHAAVTEAVQHLAPFGASLVEYTSYADTATTIPGHYVLFWELRSPAGGTPVPASVFEDCCLA 522          
The following BLAST results are available for this feature:
BLAST of FC875343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH33_ARATH7.290e-8875.59Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH31_ARATH8.060e-8773.83Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ARATH2.593e-8573.83Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH32_ARATH2.593e-8573.61Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]
GH38_ORYSJ2.683e-8273.02Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI2.683e-8273.02Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ORYSJ3.280e-8066.82Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH9.243e-7561.61Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH35_ARATH5.991e-7461.33Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH34_ORYSJ1.632e-7161.36Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionC31402H05EF CTVClemen1 Citrus clementina cDNA clone C31402H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875343 ID=FC875343; Name=FC875343; organism=Citrus clementina; type=EST; length=644bp
GAATCTGGCCTAACACAAAGTATCTTGATGTCATTGTTACTGGAGCAATG
GCACAGTATATTCCTACGCTTGATTATTACAGCGGAGGCAAATTGCCAAT
GGCATGCACCATGTATGCTTCATCAGAATGTTACTTTGGGTTAAATCTTA
ACCCCATATGCAGGCCATCAGAGGTTTCTTATACAATCATGCCAAACATG
GCCTACTTTGAGTTTCTTCCCCAAGAGCCTGCACACTCATTCGGGTTGAC
CAGCAGCGACCCGCAGCCTGTTGACCTTGTCGATGTCGAAGTGGGCAAAG
AATACCAGCTTGTGATCACAACTTACGCCGGCTTGTACAGATACCGAGTC
GGGGACATCCTCCGAGTGACCGGGTTCCACAACTCAGCCCCGCAGTTCCA
TTTCGTCAGAAGAAAGAACGTCTTACTCAGCATTGAATCCGACAAAACCG
ACGAGGCCAAACTGCAGAACGCCATCGACAACGCGTCCCGACTGCTCCGA
GAATTCAACACCAACGTCGGGGAATACACAATCTGTGCGAATACAAAGAC
AATCCCAGGTCACTACGTGATATACTGGGAACTTCTAATTAAGGACTCTG
CCAATTCTCCGAACAACGAAGTCCTGAACCAGTGCTGCTTGGCC
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