FC875354

Overview
NameFC875354
Unique NameFC875354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14907 contig Ccv1_Contig14907:634..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 1.650e-90
Identity = 149/194 (76.80%), Postives = 169/194 (87.11%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNS--RVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            A+T+  +NKC+HPVWPGIQ SAG+ LLA GGFKL  NKA++++LPPLWSGRFWGRHGC FD SGRG CATGDCGGSL CNG GG PPATLAEITLG + DFYDVSLVDGYN+AMSI+P++GSG+CSYAGCVSDLN MCP GLQVRS +  RVVACKSAC A +SP+YCCTG FGNPQSCKPTAYS+IFK  CP+
Sbjct:   20 ASTVIFYNKCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLGPELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPK 213          

HSP 2 Score: 23.8682 bits (50), Expect = 1.650e-90
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  705 QSYSYAYDDP 734
            ++YSYAYDDP
Sbjct:  213 KAYSYAYDDP 222          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.950e-57
Identity = 111/196 (56.63%), Postives = 128/196 (65.31%), Query Frame = 2
Query:  128 IKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            + AT  TL N C   VW G  A  G P L  GGF+L+P  +  +  P  WSGRFW R GC FDASG GRC TGDCGG L CNG GG PP TLAE TL     +DFYDVSLVDGYN+ + I P  GSG C YAGCVSDLN  CP  L+V   + VVACKSAC   ++ +YCC G+   P++C PT YSRIFK  CP+
Sbjct:   21 VMATDFTLRNNCPTTVWAGTLAGQG-PKLGDGGFELTPGASRQLTAPAGWSGRFWARTGCNFDASGNGRCVTGDCGG-LRCNG-GGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPD 213          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.924e-53
Identity = 100/202 (49.50%), Postives = 130/202 (64.36%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            F     A  IT  NKC + VWPG      KP L+  GF+L+   + ++  P  WSGRF+GR  C  DASG+  CAT DCG G + CNG G +PPATL EIT+     QDFYDVSLVDG+N+ MS+ P  G+GKC  + C +D+N +CPA LQV+ S+  V+ACKSAC A + P+YCCT     P++C P  YS++FK  CP+
Sbjct:   18 FFSGAHAAKITFTNKCSYTVWPGTLTGDQKPQLSLTGFELATGISRSVDAPSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQ 219          

HSP 2 Score: 23.483 bits (49), Expect = 2.924e-53
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  687 FSRRFVQSYSYAYDD 731
            F  +  Q+YSYAYDD
Sbjct:  213 FKTQCPQAYSYAYDD 227          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.315e-52
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 2
Query:  128 IKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            + +   T  NKC + VWPG     G P L   GF+L+   + ++ +   WSGRFWGR  C  D+SG+ +C+TGDCG G + CNG G SPPA+L E+TL     QDFYDVSLVDG+N+ + + P  GSG C+   C +++N +CPA L  + S+  V+ CKSAC A + P+YCCTG++G P +C PT +S++FK  CP+
Sbjct:   20 VYSAKFTFTNKCPNTVWPGTLTGGGGPQLLSTGFELASGASTSLTVQAPWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQ 217          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.522e-52
Identity = 92/192 (47.92%), Postives = 120/192 (62.50%), Query Frame = 2
Query:  143 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG---QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCP 706
            + + N C   VWPG+  +AG P    GGF L   +   + +P  WSGR W R GC FD+ GRG CATGDCGG L CNG  G+ PAT+ E+TLG       FYDVSLVDG+N  +S+  + G   C  A C +D+N+ CP+ L+VR    RV  C+SAC A    RYCCTG + +P +C+PT +S +FKA+CP
Sbjct:   31 LIMVNNCGESVWPGLLGTAGHPTPQSGGFHLGAGEEAALEVPAGWSGRVWPRRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICP 222          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.890e-50
Identity = 93/202 (46.04%), Postives = 125/202 (61.88%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            F     A  IT  N C + VWPG      KP L+  GF+L+   + ++  P  WSGRFWGR  C  DA+G+  C T DCG G + CNG G  PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C +++N +CPA LQV+ ++  V++CKSAC A    +YCCT     P++C PT YS IF+  CP+
Sbjct:   18 FFSGAHAAKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQ 219          

HSP 2 Score: 24.6386 bits (52), Expect = 4.890e-50
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  687 FSRRFVQSYSYAYDD 731
            F ++  Q+YSYAYDD
Sbjct:  213 FEKQCPQAYSYAYDD 227          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.170e-49
Identity = 96/196 (48.98%), Postives = 123/196 (62.76%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDC-GGSLFCNGIGGSPPATLAE--ITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            A TI+  N C + VWPG   S  KP L+  GF+L+   ++ +  P  W+GRFW R GC  DASG+  CAT DC  G + CNG G  PPATLAE  I  G  QDFYDVSLVDG+N+ MS+ P  G+G C  A C +++N +CP+ LQ + S+  VVAC SAC    +P+YCCT     P++C PT YS IF   CP+
Sbjct:   23 AATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPD 218          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.065e-46
Identity = 86/183 (46.99%), Postives = 117/183 (63.93%), Query Frame = 2
Query:  173 VWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            VWPG      KP L+   F+L+   + ++  P  WSGRFWGR  C  DA+G+  C T DCG G + CNG G  PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C +++N+ CPA LQV+ ++  V++CKSAC A    +YCCT     P++C PT YS IF+  CP+
Sbjct:    3 VWPGTLTGDQKPQLSLTAFELASKASQSVDAPSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQ 185          

HSP 2 Score: 24.6386 bits (52), Expect = 1.065e-46
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  687 FSRRFVQSYSYAYDD 731
            F ++  Q+YSYAYDD
Sbjct:  179 FEKQCPQAYSYAYDD 193          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.839e-46
Identity = 94/196 (47.96%), Postives = 120/196 (61.22%), Query Frame = 2
Query:  134 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDC-GGSLFCNGIGGSPPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQ-VRSNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            A T++  N C + VWP   AS G P L+  GF+L+   ++ +  P  WSGRFW R  C  DASG+  C T DC  G L CNG  G PPATLAE T+  G  QDFYDVSLVDG+N+ MS+ P  G+G C    C +++NL+CP+ LQ + S+  VVAC SAC     P+YCCT      + C PT YS+IF   CP+
Sbjct:   23 AATMSFKNNCPYTVWP---ASFGNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPD 215          
BLAST of FC875354 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.958e-45
Identity = 90/202 (44.55%), Postives = 120/202 (59.41%), Query Frame = 2
Query:  116 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLSPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAXHSPRYCCTGSFGNPQSCKPTAYSRIFKALCPE 709
            F     +  IT  N C   +WPG   S  KP L   GF L+   + T+ +   W GRFW R  C  + SG+  C T DC  G + CNG G  PPA+L EI +   +  DFYDVSLVDGYN+ +S+    G+G C    C +++N +CPA LQV+ S++ V+ACKSAC A + P+YCCTG+F   ++C  T YSRIFK  CP+
Sbjct:   16 FLSGAHSAKITFTNNCPRTIWPGTLTSDQKPQLPNTGFVLASKASLTLGVQAPWKGRFWARTRCTTN-SGKFTCETADCSTGQVACNGNGAIPPASLVEINIAANRGMDFYDVSLVDGYNLPVSVATRGGTGDCKATSCRANVNAVCPAELQVKGSDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQ 216          

HSP 2 Score: 24.2534 bits (51), Expect = 1.958e-45
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  687 FSRRFVQSYSYAYDD 731
            F ++  Q+YSYAYDD
Sbjct:  210 FKQQCPQAYSYAYDD 224          
The following BLAST results are available for this feature:
BLAST of FC875354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TLPH_ARATH1.650e-9076.80Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PR5_ARATH3.950e-5756.63Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PRUPE2.924e-5349.50Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_PYRPY1.315e-5246.46Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLPH_ORYSJ8.522e-5247.92Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TP1A_MALDO4.890e-5046.04Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP_PRUAV5.170e-4948.98Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1B_MALDO1.065e-4646.99Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP2_PRUPE1.839e-4647.96Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
TLP1_CASSA1.958e-4544.55Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]

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Properties
Property NameValue
Genbank descriptionC31403A04EF CTVClemen1 Citrus clementina cDNA clone C31403A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875354 ID=FC875354; Name=FC875354; organism=Citrus clementina; type=EST; length=751bp
GACTCTCCTCTCACTCACTGCCTTCAAATCTTTTGCTTTTTGCTGAGTTT
CAGCCATGGCAGTAACAATGCTGCTTAGATCTCTACTCGCTCTCTTGCTC
ACCACCATCGTCCTCTTCTCTCACAATATCAAAGCTACAACAATCACATT
ATTCAACAAATGCGAGCACCCAGTTTGGCCCGGAATACAAGCGAGCGCAG
GCAAGCCACTACTGGCACGTGGCGGCTTCAAGCTCTCACCAAACAAGGCC
TACACCATACGCCTACCGCCCCTCTGGTCCGGGCGCTTCTGGGGTCGCCA
TGGATGCAGGTTCGACGCCTCAGGCCGGGGCCGCTGCGCCACCGGGGACT
GCGGCGGATCGCTCTTCTGCAACGGCATAGGCGGCAGCCCGCCGGCCACC
CTCGCCGAAATCACGCTGGGGCAGCAGCAGGACTTCTACGACGTGAGCCT
GGTCGACGGTTACAACATCGCAATGTCGATTTTGCCCATCAGAGGCTCCG
GGAAATGCAGCTACGCTGGGTGTGTGAGTGACCTGAACTTGATGTGTCCC
GCGGGGCTACAAGTGAGGTCCAACAGCAGAGTGGTGGCCTGCAAAAGTGC
TTGTTTCGCTTTNCACTCGCCCAGGTATTGCTGCACTGGGAGCTTTGGGA
ATCCTCAATCCTGCAAGCCCACTGCTTACTCCAGGATTTTCAAGGCGCTT
TGTCCAGAGCTACAGCTATGCTTATGATGATCCACTAGTATGCTACTGCA
C
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