FC875370

Overview
NameFC875370
Unique NameFC875370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11244 contig Ccv1_Contig11244:4..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875370 vs. ExPASy Swiss-Prot
Match: SKI31_ARATH (F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.423e-37
Identity = 68/99 (68.69%), Postives = 86/99 (86.87%), Query Frame = 2 
Query:  416 RIDTGIFSKIPPELFTHILKFLSSEDLVSCSLVCRFLNYAASDESLWRRLYCMRWGLLPPTNNLRVCAWKKLYIQRDKEDLAKLVRSCPTEF*EYYIQM 712
            RI++G+F+ +P ELF HILKFLSSEDLVSCSLVC+FLN+AA+DESLWRRLYC+RWGL  P+  LR  AWKKLYI RD++D+ +LVR+CP++F EYY+ M
Sbjct:   65 RIESGVFTNVPTELFRHILKFLSSEDLVSCSLVCKFLNFAAADESLWRRLYCIRWGLTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPSDFKEYYVHM 163
The following BLAST results are available for this feature:
BLAST of FC875370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI31_ARATH1.423e-3768.69F-box protein SKIP31 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionC31403B11EF CTVClemen1 Citrus clementina cDNA clone C31403B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875370 ID=FC875370; Name=FC875370; organism=Citrus clementina; type=EST; length=717bp
GGCTGTAATTTTCACCTCGTAAAATATTACAAAAACGGCCACAACCCTGC
CGCCGCCGTCCGATCCAAATCCAGATTCCGCTGCTCCTTTCGTCTCGACG
ATGACGTTATCCGACGACGAAGACGAAAGCTTGGCTCAGTTCCTGGAATC
CGAAGTCCTCGCTCAAGTTTCAGATTCCGAGGTTCTATTCATCTTACACA
ATCATTATGAATACGATGTCGTTTCACGTCCGCTTATATCAACCTTTTTT
TGTAAATAGGAAGAGAAGCAATCCAAGGAAGAAGATGAACCGAAAAAGAA
GAAATTGTGCGTGGAGAAATTCTCAGCCACGGGCTCGTGCTCGGGGTCGG
GCTCGGATAGTATTAGTAACAATAATAATTTTAATAATAAAAGTGAGATT
CATTCTAGTCCTAATAGAATTGATACTGGAATTTTCAGCAAGATTCCGCC
TGAATTGTTCACGCACATACTCAAATTCCTGTCTTCTGAGGATCTTGTAT
CATGTTCGCTGGTTTGTAGATTCCTGAATTATGCTGCTTCTGATGAGTCC
TTGTGGCGTCGCTTATACTGTATGCGATGGGGTCTGTTGCCCCCAACCAA
CAATTTACGAGTTTGTGCTTGGAAAAAGCTTTATATTCAGCGCGATAAGG
AAGACTTGGCCAAACTAGTTAGAAGTTGCCCAACTGAGTTTTAAGAGTAC
TATATCCAGATGNCAGC
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