FC875372

Overview
NameFC875372
Unique NameFC875372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14478 contig Ccv1_Contig14478:288..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875372 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.984e-52
Identity = 100/164 (60.98%), Postives = 123/164 (75.00%), Query Frame = 1
Query:    1 EKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 486
            EKVYP NKVP+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:   77 EKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of FC875372 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.984e-52
Identity = 100/164 (60.98%), Postives = 123/164 (75.00%), Query Frame = 1
Query:    1 EKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 486
            EKVYP NKVP+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:   77 EKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of FC875372 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.906e-47
Identity = 91/163 (55.83%), Postives = 120/163 (73.62%), Query Frame = 1
Query:    1 EKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 483
            EKVY    VP+LEHNGK++GESLDLIKY+DS+FEGP+LLP+DPEKR+FADEL ++ + FT  +Y+    K D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+IT GRP L  +IEE+N+++AY  TK DP  L++  ++
Sbjct:   76 EKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKT 238          
BLAST of FC875372 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.452e-41
Identity = 84/163 (51.53%), Postives = 111/163 (68.10%), Query Frame = 1
Query:    1 EKVYPVNKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSFKGDPA--KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRS 483
            +KVY    VP+LEH+ +V GESLDLI+Y+DSNF+GP+LLP+D  KR+FADELF+  + FT  +Y+      A   +   A D LE  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI  GRP L  +I+E+NK++AY  TK DP  L++  +S
Sbjct:   76 DKVYAQGTVPSLEHDSEVRGESLDLIRYIDSNFDGPALLPEDAAKRQFADELFASANAFTKALYSPLLSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAKS 238          
BLAST of FC875372 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 55/175 (31.43%), Postives = 82/175 (46.86%), Query Frame = 1
Query:   22 KVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFA--------DELFSHIDTFTNDVYTSFKGDPAKQAGPAFDYLEKALD-KFDDGPFFLG-QFSQVDIA-------YIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKELVEFYRSRFVA 495
            KVP L HNGK I ES+ +++Y+D  FEGPS+LP DP  R  A        D++ + ++TF        KG+  ++       + K LD +  D  FF+G +F   DIA          F E + + L    K+      P  + W +E       K +     EL+ F+R+RF A
Sbjct:   52 KVPVLIHNGKPIVESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDKVAAVVNTFFR------KGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKF------PNFSRWRDEYINCSQVKESLPSRDELLAFFRARFQA 214          
BLAST of FC875372 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.025e-11
Identity = 54/165 (32.73%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   22 KVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALD-KFDDGPFFLG-QFSQVDIAYIPFVERFQIFLSEEFKYDITAGR---PKLAAWIEELNKLDAYKSTKADPKELVEFYRSRFVA 495
            KVP L HNGK I ES+ +++Y+D  FEGPS+LP DP  R  A      +D     V  +F  KG+  ++       + K LD +  D  FF G +F   DIA    +  F + + EE   D+       P  + W +E         +     EL+ F+R+RF A
Sbjct:   52 KVPVLIHNGKPIVESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIA--ANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAFFRARFQA 214          
BLAST of FC875372 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 53/160 (33.12%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   22 KVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALD-KFDDGPFFLG-QFSQVDIAYIPFVERFQIFLSEEFKYDITAGR-PKLAAWIEELNKLDAYKSTKADPKELVEFYRSR 486
            KVP L HNGK I ES+ +++Y+D  FEGPS+LP DP  R  A      +D     V  +F  KG+  ++       + K LD +  D  FF+G +F   DIA         +F        +T+ + P    W  E       K +     EL+ FYRSR
Sbjct:   52 KVPVLIHNGKRIVESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAFYRSR 211          
The following BLAST results are available for this feature:
BLAST of FC875372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IN21B_ORYSJ8.984e-5260.98Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI8.984e-5260.98Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ3.906e-4755.83Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE2.452e-4151.53Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
GSTX3_TOBAC1.550e-1131.43Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC2.025e-1132.73Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC4.511e-1133.13Probable glutathione S-transferase OS=Nicotiana ta... [more]
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Properties
Property NameValue
Genbank descriptionC31403C01EF CTVClemen1 Citrus clementina cDNA clone C31403C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875372 ID=FC875372; Name=FC875372; organism=Citrus clementina; type=EST; length=584bp
GAGAAGGTTTATCCTGTTAACAAGGTTCCAGCACTGGAGCACAATGGCAA
AGTTATTGGAGAATCTCTTGATTTGATTAAATATGTTGACAGCAATTTTG
AAGGGCCTTCACTTTTACCTGATGATCCTGAGAAACGAAAGTTTGCTGAT
GAACTGTTTTCCCACATCGATACCTTCACCAACGATGTGTACACTTCATT
CAAAGGAGACCCAGCAAAACAAGCTGGTCCTGCTTTTGATTACTTAGAGA
AGGCCCTTGATAAATTTGATGATGGCCCGTTCTTCCTTGGACAGTTCAGT
CAGGTGGACATAGCCTATATTCCATTTGTTGAGAGATTCCAGATCTTCTT
ATCAGAAGAATTTAAGTATGACATCACTGCAGGCAGGCCTAAACTGGCAG
CATGGATTGAGGAGTTGAACAAGCTCGATGCTTACAAGTCAACAAAAGCA
GATCCAAAAGAACTCGTTGAATTTTACAGGAGCCGCTTCGTGGCCAAGCA
GTGAACCTGCAATCAGTCGTCTTAGAAGCGCACTGAATCAGTTGGTGGCG
TGGTTTGTAAATCTCGTATAATAAGCTGCGCGTT
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