FC875373

Overview
NameFC875373
Unique NameFC875373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10218 contig Ccv1_Contig10218:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.398e-64
Identity = 123/154 (79.87%), Postives = 135/154 (87.66%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWL-EEDDET--IAAGDGPQPGFPYAGNEVQVP 455
            PLV+LLQNAEFDIKKEAAWAISNATSGG+H+QIKYLV +GCIKPLCDL VCPDPRI+TVCLEGLENILKVGEAEKN+G  T D+N YAQL+++AEGLEKIENLQSHDNNEIYEKAVKILETYWL EEDDET      DG Q GF + GN+  VP
Sbjct:  373 PLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLG-HTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVP 525          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.637e-63
Identity = 115/151 (76.16%), Postives = 131/151 (86.75%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVP 455
            PLV+LLQ AEFDIKKEAAWAISNATSGGTH+QIKYLV +GCIKPLCDL VCPDPRIVTVCLEGLENILKVGEAEKN+G    DVN YAQ++++AEGLEKIENLQSHDN EIYEKAVK+LE+YWLEE+D+ + +GD  Q GF +   +  VP
Sbjct:  379 PLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG--AGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNFGNQQPNVP 527          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.497e-58
Identity = 110/151 (72.85%), Postives = 128/151 (84.77%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAAGDGPQPGFPYAGNEVQVP 455
            PLV LLQNAEF+IKKEAAWAISNATSGG H+QIK+LV +GCIKPLCDL VCPDPRIVTVCLEGLENILK+GEA+K++G  T  VN YAQL++EAEGLEKIENLQSHDN EIYEKAVKILETYWLEE+D  ++  +     F + G ++ +P
Sbjct:  374 PLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGN-TEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDVPVSLNEDQ---FEFGGADISLP 520          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.817e-57
Identity = 105/133 (78.95%), Postives = 120/133 (90.23%), Query Frame = 3
Query:    3 PLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAA 401
            PLVNLLQ AEFDIKKEAAWAISNATSGG+H+QIKYLV EGCIKPLCDL +CPD RIVTVCLEGLENILKVGE +K +  A  DVN ++Q+++EAEGLEKIENLQSHDNNEIYEKAVKILE YW++E+D+T+ A
Sbjct:  373 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTL--AAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGA 503          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.316e-51
Identity = 98/148 (66.22%), Postives = 120/148 (81.08%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEE-DDETIAAGDGPQPGFPYAGNEV 446
            LV +LQ+AEF++KKEAAW ISNATSGGTH+QIK++V +GCIKPLCDL  CPD ++VTVCLE LENIL VGEAEKN+G  T + N YAQ+++EAEGLEKIENLQSHDNN+IY+KAVKILET+W E+ ++E       PQ GF +    V
Sbjct:  377 LVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLG-HTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTNV 523          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1_CHICK (Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36
Identity = 77/132 (58.33%), Postives = 97/132 (73.48%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAEKNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAA 401
            L+N+LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L GLENIL++GE E     + A +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  ED+++  A
Sbjct:  385 LINILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALSGLENILRLGEQESK--RSGAGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIA 514          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1_PONAB (Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.364e-35
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAA 401
            L+++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L GLENIL++GE E K  GT    +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  ED+++  A
Sbjct:  385 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIA 514          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1_HUMAN (Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.364e-35
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAA 401
            L+++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L GLENIL++GE E K  GT    +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  ED+++  A
Sbjct:  385 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIA 514          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA1_BOVIN (Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.364e-35
Identity = 78/133 (58.65%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETIAA 401
            L+++LQ AEF  +KEAAWAI+NATSGG+ EQIKYLV  GCIKPLCDL    D +IV V L GLENIL++GE E K  GT    +N Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+  ED+++  A
Sbjct:  385 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG---INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSSIA 514          
BLAST of FC875373 vs. ExPASy Swiss-Prot
Match: IMA7_PONAB (Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.781e-35
Identity = 79/133 (59.40%), Postives = 99/133 (74.44%), Query Frame = 3
Query:    6 LVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVREGCIKPLCDLFVCPDPRIVTVCLEGLENILKVGEAE-KNMGTATADVNQYAQLVEEAEGLEKIENLQSHDNNEIYEKAVKILETYW-LEEDDETIA 398
            L+ +LQ AEF  +KEAAWAI+NATSGGT EQI+YLV  GCIKPLCDL    D +IV V L GLENIL++GE E K  G+    VN Y  L+EEA GL+KIE LQSH+N EIY+KA  ++E Y+ +E+DD ++A
Sbjct:  383 LIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSG---VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLA 512          
The following BLAST results are available for this feature:
BLAST of FC875373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
IMA1_ARATH1.398e-6479.87Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1B_ORYSJ2.637e-6376.16Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA_SOLLC1.497e-5872.85Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA1A_ORYSJ4.817e-5778.95Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
IMA2_ARATH2.316e-5166.22Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMA1_CHICK3.589e-3658.33Importin subunit alpha-1 OS=Gallus gallus GN=KPNA1... [more]
IMA1_PONAB1.364e-3558.65Importin subunit alpha-1 OS=Pongo abelii GN=KPNA1 ... [more]
IMA1_HUMAN1.364e-3558.65Importin subunit alpha-1 OS=Homo sapiens GN=KPNA1 ... [more]
IMA1_BOVIN1.364e-3558.65Importin subunit alpha-1 OS=Bos taurus GN=KPNA1 PE... [more]
IMA7_PONAB1.781e-3559.40Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 ... [more]

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Properties
Property NameValue
Genbank descriptionC31403C02EF CTVClemen1 Citrus clementina cDNA clone C31403C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875373 ID=FC875373; Name=FC875373; organism=Citrus clementina; type=EST; length=726bp
GTCCCCTTGTCAATCTGCTTCAAAATGCTGAATTTGATATAAAGAAGGAG
GCTGCTTGGGCAATTTCAAATGCCACCTCGGGTGGTACTCATGAGCAAAT
CAAGTACCTGGTGAGAGAAGGGTGTATAAAACCTTTGTGTGATCTCTTTG
TATGCCCTGATCCACGGATTGTCACTGTTTGCTTAGAAGGATTAGAGAAC
ATTTTGAAGGTCGGGGAAGCTGAAAAGAATATGGGTACTGCCACTGCAGA
TGTTAATCAATATGCCCAGTTGGTTGAGGAGGCTGAGGGGTTAGAAAAGA
TTGAAAATCTACAAAGTCATGACAACAATGAGATCTATGAGAAGGCAGTA
AAAATTCTTGAGACATACTGGTTGGAAGAGGACGATGAGACAATAGCTGC
AGGTGATGGTCCTCAGCCAGGTTTCCCATATGCAGGGAATGAGGTTCAAG
TTCCGTCTGGTGGATTCAATTTCAGTTGAAAATCAATTGGCTCATTTTCT
GGTGGGAGGGATACATAGTTTGTCGGATGGAGCAGAAGATTGTGTTGGGG
TGGGTTTGAATGTTGACGACGTATGTCGGCGTCAAGTTGGGTCGGGTCAG
GGCGCCTTTGCATGTCTGGTTACAGGTTTGGTCCAGTGTCTATTGTGGTT
GAAAGGTGCCAACTAAGGTCGGTCTATACTTACAGTGTCCAATAAGTGAG
GCTGGATGGATTACTACATATGATGG
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