FC875375

Overview
NameFC875375
Unique NameFC875375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_SYNY3 (Protein mrp homolog OS=Synechocystis sp. (strain PCC 6803) GN=mrp PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.487e-44
Identity = 99/228 (43.42%), Postives = 140/228 (61.40%), Query Frame = 2
Query:   26 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPE--GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM--NPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            VL  L  + DP+    +V    ++D+ I  A G VSF L LTTPACP+++   +   + V  +P V KV V ++A+  +    + LP+   + ++ NI+A+SS KGGVGKSTVAVN+A  LA  GA VG+ DAD+YGP+ PTM+      +++  +P+   + P    G+K+VS GF        I RGPM++G+I Q L    WG LDYL++DMPPGTGD QLTL Q
Sbjct:    7 VLTVLRPVQDPELQKSLVELNMIRDVAI--AGGTVSFTLVLTTPACPLREFIVEDCEKAVKTLPGVEKVEVKVTAETPQQ---KSLPDRQSVGQVKNIIAISSGKGGVGKSTVAVNVAVALAQTGAAVGLLDADIYGPNAPTMLGLSGAAVQVQNSPQGEVLEPVFNHGIKMVSMGFLIDPDQPVIWRGPMLNGIIRQFLYQVNWGALDYLIVDMPPGTGDAQLTLTQ 229          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_DEIRA (Protein mrp homolog OS=Deinococcus radiodurans GN=mrp PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.902e-40
Identity = 96/224 (42.86%), Postives = 137/224 (61.16%), Query Frame = 2
Query:   26 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF-GFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            +L+ALS + DP+   D+VS G ++  +++  + +V  ++ LTTPACP+K   E      +L +P V  V +   A     + A   P  L  + ++V V S KGGVGKS+VAVNLA +LA  GARVG+ DADVYGPS+  M+      +  N E R + P E  GV+ +S    S  G+A++ RGPM+   I Q L  + WGELDYL++D+PPGTGD+QL+L Q
Sbjct:    5 LLRALSTVNDPELHRDLVSLGMIERAELSGDVAQV--KVNLTTPACPLKGQIELDVRSALLQVPGVRDVQIEFGAM----VRAATQP-ALPGVKHVVLVGSGKGGVGKSSVAVNLAASLARDGARVGLLDADVYGPSVAHMLGQGQARVTAN-EDRKMRPIEAHGVRFISMANLSPAGQALVWRGPMLHSAIQQFLKDSAWGELDYLIVDLPPGTGDVQLSLTQ 220          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_HELPJ (Protein mrp homolog OS=Helicobacter pylori J99 GN=mrp PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36
Identity = 90/229 (39.30%), Postives = 138/229 (60.26%), Query Frame = 2
Query:   17 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK-ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            + DVL AL  II P+F  DIVS GFVK++ +++   ++   +E+ + +     +  +  ++ +     V  +N+ +   P +P   +   + L K I ++V +SS KGGVGKST +VNL+  LA +  +VG+ DADVYGP++P M+  +N  + M+P  + +IP +  GV ++S G     GQ   I RGPM+   I Q+L+   WG+LD LV+DMPPGTGD QLTL Q
Sbjct:    4 QEDVLNALKTIIYPNFEKDIVSFGFVKNITLHD--NQLGLLIEIPSSSEETSAILRENISKAMQE-KGVKALNLDIKTPP-KPQAPKPTTKNLAKNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADVIMDPSGKKLIPLKAFGVSVMSMGLLYDEGQS-LIWRGPMLMRAIEQMLSDIIWGDLDVLVVDMPPGTGDAQLTLAQ 227          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_HELPY (Protein mrp homolog OS=Helicobacter pylori GN=mrp PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.397e-36
Identity = 89/229 (38.86%), Postives = 138/229 (60.26%), Query Frame = 2
Query:   17 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK-ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            + DVL AL  II P+F  DIVS GFVK++ +++   ++   +E+ + +     +  +  ++ +     V  +N+ +   P +P   +   + L K I ++V +SS KGGVGKST +VNL+  LA +  +VG+ DADVYGP++P M+  ++  + M+P  + +IP +  GV ++S G     GQ   I RGPM+   I Q+L+   WG+LD LV+DMPPGTGD QLTL Q
Sbjct:    4 QEDVLNALKTIIYPNFEKDIVSFGFVKNITLHD--DQLGLLIEIPSSSEETSAILRENISKAMQE-KGVKALNLDIKTPP-KPQAPKPTTKNLAKNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQSADVIMDPSGKKLIPLKAFGVSVMSMGLLYDEGQS-LIWRGPMLMRAIEQMLSDIIWGDLDVLVVDMPPGTGDAQLTLAQ 227          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_HAEIN (Protein mrp homolog OS=Haemophilus influenzae GN=mrp PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 90/233 (38.63%), Postives = 127/233 (54.51%), Query Frame = 2
Query:    5 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPAC--PIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            T   +N V + + Q   P    D++    +K ++     G  + R+EL  P       +  +Q  ++ +L       +   ++ Q A    A   P  ++ + NI+AVSS KGGVGKS+V+VNLA  L   GARVGI DAD+YGPS+P M+   ++    +P+ + I P +  G+   S GF  +     I RGPM S  ++QLL  T W  LDYLVIDMPPGTGDIQLTL Q
Sbjct:   10 TADQQNQVQQIIQQFQHPTLQKDLIVLNTLKKVE----KGGDTLRIELQLPFAWNSGAEQLKQAVSDALLKATDCKLIKWAVAYQIATLKRANNQP-AVKGVKNIIAVSSGKGGVGKSSVSVNLALALQAQGARVGILDADIYGPSIPHMLGAADQ-RPTSPDNQHITPIKAHGLSANSIGFLMNEDSATIWRGPMASSALSQLLNETLWDSLDYLVIDMPPGTGDIQLTLSQ 236          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_AQUAE (Protein mrp homolog OS=Aquifex aeolicus GN=mrp PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32
Identity = 88/246 (35.77%), Postives = 136/246 (55.28%), Query Frame = 2
Query:   14 AENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK-----------------ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            A  DV++AL +    D G +      VKD+++   +G V   +    P   ++D+   +  + +  +P V K++V      A+    +Q P+  Q                  + +I+AV S KGGVGKSTVA NLA  L+ +G +VG+ DADVYGPS+PT+   +   + ++  +R IIP E  G+K++S GF   S     I RGPM+   + + L +T+WG LD+LV+D+PPGTGD+Q+TL Q
Sbjct:    2 AVQDVIEALKKETLEDVGINQNLAQLVKDIKM---VGNV-LTIVFEPPKQGLEDIIRAKVIDALGNLPEVQKIDVKFVKPQAQIPVKQQAPQQQQTPPPQTQQPMFTRKKVPGVKHIIAVGSGKGGVGKSTVAANLAVALSQLGYKVGLLDADVYGPSVPTLFGLKGERVTVDQFQR-IIPVEKYGLKILSIGFMLPSEDTPIIWRGPMLMKALTEFLFSTKWGNLDFLVMDLPPGTGDVQITLAQ 242          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: YCAB_PSEFR (Uncharacterized ATP-binding protein in capB 3'region OS=Pseudomonas fragi PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 77/140 (55.00%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  278 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIM--RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            Q+P GL  + NIVAV+S KGGVGKST A NLA  LA  GARVGI DAD+YGPS   M            +++  +P E  GV+++S  F       M  RGPMVSG + QL+T T W +LDYLVIDMPPGTGDIQLTL Q
Sbjct:   31 QIP-GLANVKNIVAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGVMFGIAEGTRPKIRDQKWFVPIEAHGVEVMSMAFLTDDNTPMVWRGPMVSGALLQLVTQTAWNDLDYLVIDMPPGTGDIQLTLAQ 169          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_ECOLI (Protein mrp OS=Escherichia coli (strain K12) GN=mrp PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 71/136 (52.21%), Postives = 91/136 (66.91%), Query Frame = 2
Query:  290 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            G+  + NI+AVSS KGGVGKS+ AVNLA  LA  GA+VGI DAD+YGPS+PTM+  EN+    +P+   + P    G+   S G+  +     + RGPM S  + Q+L  T W +LDYLV+DMPPGTGDIQLTL Q
Sbjct:  102 GINGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ-RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQ 236          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_ECOL6 (Protein mrp OS=Escherichia coli O6 GN=mrp PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31
Identity = 71/136 (52.21%), Postives = 91/136 (66.91%), Query Frame = 2
Query:  290 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            G+  + NI+AVSS KGGVGKS+ AVNLA  LA  GA+VGI DAD+YGPS+PTM+  EN+    +P+   + P    G+   S G+  +     + RGPM S  + Q+L  T W +LDYLV+DMPPGTGDIQLTL Q
Sbjct:  102 GINGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ-RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQ 236          
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_MYCLE (Protein mrp homolog OS=Mycobacterium leprae GN=mrp PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30
Identity = 81/239 (33.89%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   26 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP---------------ARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691
            V  AL+++IDP+    I   G VK++ I E  G V   + LT  +CP K    +R  + +  +P    V V++                     P+     P  L ++     V+S KGGVGKSTV VNLA  +A  G  VG+ DAD++G S+P M+    R +++   +  I+P     VK++S G   +G    I RGPM+   + Q L+   WG+LD L++D+PPGTGDI +++ Q
Sbjct:   15 VSTALAKVIDPELQRPITELGMVKNIDI-EPGGNVQVGIYLTIASCPKKSEISKRVTKAIADVPGTAAVEVSLDVMSDEQRTKLRKKLRGDAREPMIPFAQPNSLTRV---YTVASGKGGVGKSTVTVNLATAIAARGLAVGVLDADIHGHSIPRMMGSNQRPIQL---ESMILPPIVHEVKVISIGQFTEGNTPVIWRGPMLHRALQQFLSDVYWGDLDVLMLDLPPGTGDIAISVAQ 246          
The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
MRP_SYNY31.487e-4443.42Protein mrp homolog OS=Synechocystis sp. (strain P... [more]
MRP_DEIRA2.902e-4042.86Protein mrp homolog OS=Deinococcus radiodurans GN=... [more]
MRP_HELPJ1.490e-3639.30Protein mrp homolog OS=Helicobacter pylori J99 GN=... [more]
MRP_HELPY7.397e-3638.86Protein mrp homolog OS=Helicobacter pylori GN=mrp ... [more]
MRP_HAEIN5.861e-3338.63Protein mrp homolog OS=Haemophilus influenzae GN=m... [more]
MRP_AQUAE1.705e-3235.77Protein mrp homolog OS=Aquifex aeolicus GN=mrp PE=... [more]
YCAB_PSEFR4.962e-3255.00Uncharacterized ATP-binding protein in capB 3'regi... [more]
MRP_ECOLI4.200e-3152.21Protein mrp OS=Escherichia coli (strain K12) GN=mr... [more]
MRP_ECOL64.200e-3152.21Protein mrp OS=Escherichia coli O6 GN=mrp PE=3 SV=... [more]
MRP_MYCLE2.722e-3033.89Protein mrp homolog OS=Mycobacterium leprae GN=mrp... [more]

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Properties
Property NameValue
Genbank descriptionC31403C04EF CTVClemen1 Citrus clementina cDNA clone C31403C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bp
ATCTACTGGAACAGCTGAGAATGATGTACTGAAAGCCTTGTCGCAAATTA
TTGATCCAGACTTTGGAACAGATATTGTCTCATGTGGTTTTGTGAAAGAT
ATGCAAATCAATGAAGCTCTGGGAGAGGTTTCCTTTCGGTTAGAGCTCAC
AACTCCAGCATGTCCAATCAAGGACATGTTTGAGCAAAGGGCAAATGAGG
TGGTGCTTGCAATTCCTTGGGTCAACAAAGTTAATGTGACTATGTCAGCA
CAACCAGCCAGACCTATTTTTGCAGAGCAACTTCCAGAAGGTTTACAGAA
AATTTCAAATATTGTGGCTGTTTCAAGTTGCAAGGGAGGTGTAGGGAAAT
CCACAGTAGCTGTAAATCTTGCTTACACTTTAGCAGGTATGGGTGCAAGG
GTTGGTATCTTTGATGCTGATGTCTATGGTCCGAGTTTACCAACAATGGT
CTCTCCAGAAAATCGACTGCTAGAGATGAATCCGGAGAAGAGAACAATTA
TTCCAACTGAATACCTGGGAGTCAAGTTGGTGTCTTTTGGATTTTCCGGG
CAAGGTCGTGCAATAATGCGAGGTCCAATGGTTTCTGGGGTCATCAACCA
ACTTCTGACAACAACTGAGTGGGGAGAGCTGGACTACCTTGTTATTGACA
TGCCTCCTGGAACTGGTGACATCCAACTTACTTTATGTCAGGT
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