FC875375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_SYNY3 (Protein mrp homolog OS=Synechocystis sp. (strain PCC 6803) GN=mrp PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.487e-44 Identity = 99/228 (43.42%), Postives = 140/228 (61.40%), Query Frame = 2 Query: 26 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPE--GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM--NPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 VL L + DP+ +V ++D+ I A G VSF L LTTPACP+++ + + V +P V KV V ++A+ + + LP+ + ++ NI+A+SS KGGVGKSTVAVN+A LA GA VG+ DAD+YGP+ PTM+ +++ +P+ + P G+K+VS GF I RGPM++G+I Q L WG LDYL++DMPPGTGD QLTL Q Sbjct: 7 VLTVLRPVQDPELQKSLVELNMIRDVAI--AGGTVSFTLVLTTPACPLREFIVEDCEKAVKTLPGVEKVEVKVTAETPQQ---KSLPDRQSVGQVKNIIAISSGKGGVGKSTVAVNVAVALAQTGAAVGLLDADIYGPNAPTMLGLSGAAVQVQNSPQGEVLEPVFNHGIKMVSMGFLIDPDQPVIWRGPMLNGIIRQFLYQVNWGALDYLIVDMPPGTGDAQLTLTQ 229
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_DEIRA (Protein mrp homolog OS=Deinococcus radiodurans GN=mrp PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 2.902e-40 Identity = 96/224 (42.86%), Postives = 137/224 (61.16%), Query Frame = 2 Query: 26 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF-GFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 +L+ALS + DP+ D+VS G ++ +++ + +V ++ LTTPACP+K E +L +P V V + A + A P L + ++V V S KGGVGKS+VAVNLA +LA GARVG+ DADVYGPS+ M+ + N E R + P E GV+ +S S G+A++ RGPM+ I Q L + WGELDYL++D+PPGTGD+QL+L Q Sbjct: 5 LLRALSTVNDPELHRDLVSLGMIERAELSGDVAQV--KVNLTTPACPLKGQIELDVRSALLQVPGVRDVQIEFGAM----VRAATQP-ALPGVKHVVLVGSGKGGVGKSSVAVNLAASLARDGARVGLLDADVYGPSVAHMLGQGQARVTAN-EDRKMRPIEAHGVRFISMANLSPAGQALVWRGPMLHSAIQQFLKDSAWGELDYLIVDLPPGTGDVQLSLTQ 220
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_HELPJ (Protein mrp homolog OS=Helicobacter pylori J99 GN=mrp PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36 Identity = 90/229 (39.30%), Postives = 138/229 (60.26%), Query Frame = 2 Query: 17 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK-ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 + DVL AL II P+F DIVS GFVK++ +++ ++ +E+ + + + + ++ + V +N+ + P +P + + L K I ++V +SS KGGVGKST +VNL+ LA + +VG+ DADVYGP++P M+ +N + M+P + +IP + GV ++S G GQ I RGPM+ I Q+L+ WG+LD LV+DMPPGTGD QLTL Q Sbjct: 4 QEDVLNALKTIIYPNFEKDIVSFGFVKNITLHD--NQLGLLIEIPSSSEETSAILRENISKAMQE-KGVKALNLDIKTPP-KPQAPKPTTKNLAKNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQNADVIMDPSGKKLIPLKAFGVSVMSMGLLYDEGQS-LIWRGPMLMRAIEQMLSDIIWGDLDVLVVDMPPGTGDAQLTLAQ 227
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_HELPY (Protein mrp homolog OS=Helicobacter pylori GN=mrp PE=3 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 7.397e-36 Identity = 89/229 (38.86%), Postives = 138/229 (60.26%), Query Frame = 2 Query: 17 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK-ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 + DVL AL II P+F DIVS GFVK++ +++ ++ +E+ + + + + ++ + V +N+ + P +P + + L K I ++V +SS KGGVGKST +VNL+ LA + +VG+ DADVYGP++P M+ ++ + M+P + +IP + GV ++S G GQ I RGPM+ I Q+L+ WG+LD LV+DMPPGTGD QLTL Q Sbjct: 4 QEDVLNALKTIIYPNFEKDIVSFGFVKNITLHD--DQLGLLIEIPSSSEETSAILRENISKAMQE-KGVKALNLDIKTPP-KPQAPKPTTKNLAKNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQSADVIMDPSGKKLIPLKAFGVSVMSMGLLYDEGQS-LIWRGPMLMRAIEQMLSDIIWGDLDVLVVDMPPGTGDAQLTLAQ 227
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_HAEIN (Protein mrp homolog OS=Haemophilus influenzae GN=mrp PE=3 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33 Identity = 90/233 (38.63%), Postives = 127/233 (54.51%), Query Frame = 2 Query: 5 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPAC--PIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 T +N V + + Q P D++ +K ++ G + R+EL P + +Q ++ +L + ++ Q A A P ++ + NI+AVSS KGGVGKS+V+VNLA L GARVGI DAD+YGPS+P M+ ++ +P+ + I P + G+ S GF + I RGPM S ++QLL T W LDYLVIDMPPGTGDIQLTL Q Sbjct: 10 TADQQNQVQQIIQQFQHPTLQKDLIVLNTLKKVE----KGGDTLRIELQLPFAWNSGAEQLKQAVSDALLKATDCKLIKWAVAYQIATLKRANNQP-AVKGVKNIIAVSSGKGGVGKSSVSVNLALALQAQGARVGILDADIYGPSIPHMLGAADQ-RPTSPDNQHITPIKAHGLSANSIGFLMNEDSATIWRGPMASSALSQLLNETLWDSLDYLVIDMPPGTGDIQLTLSQ 236
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_AQUAE (Protein mrp homolog OS=Aquifex aeolicus GN=mrp PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.705e-32 Identity = 88/246 (35.77%), Postives = 136/246 (55.28%), Query Frame = 2 Query: 14 AENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIFAEQLPEGLQK-----------------ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 A DV++AL + D G + VKD+++ +G V + P ++D+ + + + +P V K++V A+ +Q P+ Q + +I+AV S KGGVGKSTVA NLA L+ +G +VG+ DADVYGPS+PT+ + + ++ +R IIP E G+K++S GF S I RGPM+ + + L +T+WG LD+LV+D+PPGTGD+Q+TL Q Sbjct: 2 AVQDVIEALKKETLEDVGINQNLAQLVKDIKM---VGNV-LTIVFEPPKQGLEDIIRAKVIDALGNLPEVQKIDVKFVKPQAQIPVKQQAPQQQQTPPPQTQQPMFTRKKVPGVKHIIAVGSGKGGVGKSTVAANLAVALSQLGYKVGLLDADVYGPSVPTLFGLKGERVTVDQFQR-IIPVEKYGLKILSIGFMLPSEDTPIIWRGPMLMKALTEFLFSTKWGNLDFLVMDLPPGTGDVQITLAQ 242
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: YCAB_PSEFR (Uncharacterized ATP-binding protein in capB 3'region OS=Pseudomonas fragi PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32 Identity = 77/140 (55.00%), Postives = 91/140 (65.00%), Query Frame = 2 Query: 278 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIM--RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 Q+P GL + NIVAV+S KGGVGKST A NLA LA GARVGI DAD+YGPS M +++ +P E GV+++S F M RGPMVSG + QL+T T W +LDYLVIDMPPGTGDIQLTL Q Sbjct: 31 QIP-GLANVKNIVAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGVMFGIAEGTRPKIRDQKWFVPIEAHGVEVMSMAFLTDDNTPMVWRGPMVSGALLQLVTQTAWNDLDYLVIDMPPGTGDIQLTLAQ 169
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_ECOLI (Protein mrp OS=Escherichia coli (strain K12) GN=mrp PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31 Identity = 71/136 (52.21%), Postives = 91/136 (66.91%), Query Frame = 2 Query: 290 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 G+ + NI+AVSS KGGVGKS+ AVNLA LA GA+VGI DAD+YGPS+PTM+ EN+ +P+ + P G+ S G+ + + RGPM S + Q+L T W +LDYLV+DMPPGTGDIQLTL Q Sbjct: 102 GINGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ-RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQ 236
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_ECOL6 (Protein mrp OS=Escherichia coli O6 GN=mrp PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.200e-31 Identity = 71/136 (52.21%), Postives = 91/136 (66.91%), Query Frame = 2 Query: 290 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 G+ + NI+AVSS KGGVGKS+ AVNLA LA GA+VGI DAD+YGPS+PTM+ EN+ +P+ + P G+ S G+ + + RGPM S + Q+L T W +LDYLV+DMPPGTGDIQLTL Q Sbjct: 102 GINGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ-RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQ 236
BLAST of FC875375 vs. ExPASy Swiss-Prot
Match: MRP_MYCLE (Protein mrp homolog OS=Mycobacterium leprae GN=mrp PE=3 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30 Identity = 81/239 (33.89%), Postives = 123/239 (51.46%), Query Frame = 2 Query: 26 VLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP---------------ARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ 691 V AL+++IDP+ I G VK++ I E G V + LT +CP K +R + + +P V V++ P+ P L ++ V+S KGGVGKSTV VNLA +A G VG+ DAD++G S+P M+ R +++ + I+P VK++S G +G I RGPM+ + Q L+ WG+LD L++D+PPGTGDI +++ Q Sbjct: 15 VSTALAKVIDPELQRPITELGMVKNIDI-EPGGNVQVGIYLTIASCPKKSEISKRVTKAIADVPGTAAVEVSLDVMSDEQRTKLRKKLRGDAREPMIPFAQPNSLTRV---YTVASGKGGVGKSTVTVNLATAIAARGLAVGVLDADIHGHSIPRMMGSNQRPIQL---ESMILPPIVHEVKVISIGQFTEGNTPVIWRGPMLHRALQQFLSDVYWGDLDVLMLDLPPGTGDIAISVAQ 246 The following BLAST results are available for this feature:
BLAST of FC875375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 122
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875375 ID=FC875375; Name=FC875375; organism=Citrus clementina; type=EST; length=693bpback to top |