FC875377

Overview
NameFC875377
Unique NameFC875377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13586 contig Ccv1_Contig13586:24..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875377 vs. ExPASy Swiss-Prot
Match: EIF3D_ARATH (Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.988e-50
Identity = 114/222 (51.35%), Postives = 138/222 (62.16%), Query Frame = 2 
Query:   65 MVSGEFEIGAVPFNPDGWGPPESTATTTAALPL---------HVPFAPFSRSEKLGRIADWTRNAYNNPSNRQNA-SKNPADTVFDFSA---DDSFPLSA---NPDDDSSFRLVDXXXXXXXXXXXXXXXNQHH-RPQLPQXXXXXXXXXXXXXXXXXXXXXXHYNLNRSNVNQTRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVSEPEDLLLCGSL 679
            MV+  FE  AVPFN DGWGPP+++  +++A P          +VPFA FSRS+KLGR+ADWTRN  +NPS R N  SK+    VFDFSA   D+ F L++   NPD+D++FRLVD               N HH R QLPQ                       YN NR+N++  RREAA FKSSVDIQPEWNML+QIPFSTFSKLS++V EPEDLLLCG L
Sbjct:    1 MVTEAFEFVAVPFNSDGWGPPDASDVSSSASPTSVAAANLLPNVPFASFSRSDKLGRVADWTRNL-SNPSARPNTGSKSDPSAVFDFSAFAIDEGFGLASSGGNPDEDAAFRLVDGKPPPRPKFGPKWRFNPHHNRNQLPQRRDEEVEAKKRDAEKERARRDRLYNNNRNNIHHQRREAAAFKSSVDIQPEWNMLEQIPFSTFSKLSYTVQEPEDLLLCGGL 221
The following BLAST results are available for this feature:
BLAST of FC875377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3D_ARATH2.988e-5051.35Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC31403C06EF CTVClemen1 Citrus clementina cDNA clone C31403C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875377 ID=FC875377; Name=FC875377; organism=Citrus clementina; type=EST; length=679bp
GATTATATTAACTTCAACTTCACCGAAATCAAAACCCTAGCTTTTTCACT
TCAGTCTAATCACAATGGTGAGCGGCGAATTTGAGATCGGAGCCGTTCCA
TTCAATCCTGACGGCTGGGGCCCACCGGAATCAACGGCAACCACAACCGC
TGCCCTCCCTCTCCACGTGCCGTTTGCCCCCTTCTCCCGATCCGAAAAAC
TTGGTCGGATCGCGGACTGGACCCGCAACGCATACAACAATCCATCAAAC
CGCCAAAACGCTAGCAAAAATCCGGCCGACACCGTTTTCGACTTCTCCGC
CGACGATTCCTTTCCTCTGTCTGCCAATCCCGACGACGACTCCTCCTTCC
GTCTCGTGGACGGCAAGCCTCCACCGCGTCCGAAGTTTGGCCCTAAGTGG
CGGTTTAATCAGCACCACCGTCCTCAGTTGCCCCAGCGCCGCGACGAGGA
GGTGGAGGCCCGTAAGCGCGAGGCTGAAAAAGAGCGGGCCCGACGTGACC
GCCACTACAACCTCAACCGTTCTAACGTCAACCAGACCCGACGTGAAGCT
GCAGTTTTCAAATCCTCTGTCGACATTCAGCCCGAATGGAACATGCTTGA
TCAAATTCCCTTCTCAACTTTTTCAAAACTTTCCTTCTCTGTTTCGGAGC
CTGAAGACTTGTTATTGTGTGGGTCCCTT
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