FC875383

Overview
NameFC875383
Unique NameFC875383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig509 contig Ccv1_Contig509:557..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.697e-91
Identity = 157/221 (71.04%), Postives = 172/221 (77.83%), Query Frame = 1
Query:    1 EYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663
            EY+EHHLK PPSVPSDKLTHVYTAILKPDNEL+ILIDGEEK+KANFL+++DF+PPLI                  RAKIPDP AVKP+DWDEDAPMEI DE+A KPEGWL           ATKP            APKI+NPKCEAAPGCGEWKRP KRNPAYKGKW AP+IDNP+YKGIWKP++IPNP YFEL KPDFEPIAA+GIEIWTMQDGILFD
Sbjct:  171 EYVEHHLKYPPSVPSDKLTHVYTAILKPDNELQILIDGEEKKKANFLSSEDFEPPLIPSKTIPDPDDKKPEDWDERAKIPDPSAVKPDDWDEDAPMEILDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKIENPKCEAAPGCGEWKRPTKRNPAYKGKWSAPYIDNPSYKGIWKPREIPNPEYFELAKPDFEPIAAIGIEIWTMQDGILFD 391          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX1_ARATH (Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.131e-90
Identity = 154/221 (69.68%), Postives = 170/221 (76.92%), Query Frame = 1
Query:    1 EYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663
            EY+EHHLK PPSVP DKL+HVYTAILKPDNE+RIL+DGEEK+KAN L+ +DF+P LI                  RAKIPDP+AVKPEDWDEDAPMEIEDE+A KPEGWL           ATKP            APKIDNPKCEAAPGCGEWKRPMKRNPAYKGKW +P IDNP YKGIWKP+ IPNP+YFELD+PD+EPIAA+GIEIWTMQDGILFD
Sbjct:  162 EYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLSGEDFEPALIPAKTIPDPEDKKPEDWDERAKIPDPNAVKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEVDDPEATKPEDWDDEEDGMWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELDRPDYEPIAAIGIEIWTMQDGILFD 382          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.178e-84
Identity = 148/221 (66.97%), Postives = 166/221 (75.11%), Query Frame = 1
Query:    1 EYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663
            +++EHHLK PPSVPSDKL+HVYTA+LK DNE+ ILIDGEEK+KANFL+++DF+P LI                  RAKIPDP+AVKPEDWDEDAP EI DE+A KPE WL             KP            APKI+NPKCEAAPGCGEWKRP K NPAYKGKW AP+IDNPNYKGIWKPQ+IPNP YFEL+KPDFEPIAA+GIEIWTMQDGILFD
Sbjct:  172 KHVEHHLKFPPSVPSDKLSHVYTAVLKDDNEVSILIDGEEKKKANFLSSEDFEPALIPSKTIPDPDDKKPEDWDERAKIPDPEAVKPEDWDEDAPREIIDEEAEKPEPWLDHEPEVDDPE--AKPEDWDDEEDGEWEAPKIENPKCEAAPGCGEWKRPTKSNPAYKGKWSAPYIDNPNYKGIWKPQEIPNPEYFELEKPDFEPIAAIGIEIWTMQDGILFD 390          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.178e-84
Identity = 144/221 (65.16%), Postives = 166/221 (75.11%), Query Frame = 1
Query:    1 EYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663
            E++EHHLK PPSVP D L+HVYTA+LK DNE+RIL+DGEEK+K N L+A+DF+PPLI                  RAKIPDP+AVKP+DWDEDAPMEIEDE+A KPEGWL           A+KP            APK+ N KCEAAPGCGEWKRPMKRNPAYKGKW +P IDNP YKGIWKP+ IPNP+YFEL++P+ EPIAA+GIEIWTMQDGILFD
Sbjct:  164 EFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDWDERAKIPDPNAVKPDDWDEDAPMEIEDEEAEKPEGWLDDEPVEVEDPEASKPEDWDDEEDGEWEAPKVSNTKCEAAPGCGEWKRPMKRNPAYKGKWSSPLIDNPAYKGIWKPRDIPNPDYFELERPNLEPIAAIGIEIWTMQDGILFD 384          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.428e-84
Identity = 144/221 (65.16%), Postives = 167/221 (75.57%), Query Frame = 1
Query:    1 EYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKPDFEPIAAVGIEIWTMQDGILFD 663
            +Y+EHHLK PPSVPSDKLTHVYTA++KPDNEL ILIDGEEK+KANFL+++DF+P LI                  RAKIPDP+A KP+DWDEDAPMEI DE+A KPEGWL           A KP            AP+I+NPKCE+APGCGEW+RP+KRNPAYKGKWHAP IDNP YKGIWKP++IPNP+YFEL+KP+FEPIAA+GIE    QDGILFD
Sbjct:  166 DYVEHHLKFPPSVPSDKLTHVYTAVIKPDNELVILIDGEEKKKANFLSSEDFEPALIPTKTIPDPDDKKPEDWDERAKIPDPEATKPDDWDEDAPMEILDEEAEKPEGWLDDEPEEIDDPEAVKPEDWDDEEDGEWEAPQIENPKCESAPGCGEWRRPLKRNPAYKGKWHAPLIDNPAYKGIWKPREIPNPDYFELEKPNFEPIAAIGIEDLDQQDGILFD 386          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_ASPFU (Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_4G12850 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.735e-57
Identity = 111/222 (50.00%), Postives = 130/222 (58.56%), Query Frame = 1
Query:    1 EYIEHHLKNPPSVPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFELDKP-DFEPIAAVGIEIWTMQDGILFD 663
            EY E H+  PP+  + KLT +YT I+KPD   +ILIDGE  +    L  +DF PP+                    AKIPDP+A KP+DWDEDAP EI DE+A  PE WL           A KP             P + NPKC    GCG W  PMK+NPAYKGKW AP IDNP YKGIWKP++IPNP YFE   P +FEP+ AVG EIWTMQ+ ILFD
Sbjct:  194 EYEEKHMTAPPAARTTKLTTLYTLIVKPDQSFQILIDGEAVKNGTLL--EDFAPPVNPEKEIDDPKDKKPADWVDEAKIPDPEAKKPDDWDEDAPYEIVDEEATMPEDWLEDEPTSIPDPEAEKPEDWDDEEDGDWIPPTVPNPKCNEVSGCGPWTPPMKKNPAYKGKWTAPLIDNPAYKGIWKPRKIPNPAYFEDKTPSNFEPMGAVGFEIWTMQNDILFD 413          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_MOUSE (Calnexin OS=Mus musculus GN=Canx PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.659e-54
Identity = 108/231 (46.75%), Postives = 131/231 (56.71%), Query Frame = 1
Query:    4 YIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIWTMQDGILFDTF*YQG 681
            Y E H K P +      +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KI DPDAVKP+DWDEDAP +I DE+A KPEGWL           A KP            AP+I NPKCE+APGCG W+RPM  NP YKGKW  P IDNPNY+GIWKP++IPNP++FE L+     P +A+G+E+W+M   I FD F   G
Sbjct:  215 YEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIISG 443          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_RAT (Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.167e-54
Identity = 108/231 (46.75%), Postives = 131/231 (56.71%), Query Frame = 1
Query:    4 YIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIWTMQDGILFDTF*YQG 681
            Y E H K P +      +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KI DPDAVKP+DWDEDAP +I DE+A KPEGWL           A KP            AP+I NPKCE+APGCG W+RPM  NP YKGKW  P IDNPNY+GIWKP++IPNP++FE L+     P +A+G+E+W+M   I FD F   G
Sbjct:  215 YEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIADPDAVKPDDWDEDAPSKIPDEEATKPEGWLDDEPEYIPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNFIISG 443          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_CANFA (Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.830e-54
Identity = 106/227 (46.70%), Postives = 131/227 (57.71%), Query Frame = 1
Query:    4 YIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIWTMQDGILFDTF 669
            Y E H K P +      +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KIPDPDAVKP+DW+EDAP +I DE+A KP+GWL           A KP            AP+I NPKCE+APGCG W+RPM  NP YKGKW  P IDNPNY+GIWKP++IPNP++FE L+     P +A+G+E+W+M   I FD F
Sbjct:  215 YEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNF 439          
BLAST of FC875383 vs. ExPASy Swiss-Prot
Match: CALX_PONAB (Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.697e-54
Identity = 106/227 (46.70%), Postives = 131/227 (57.71%), Query Frame = 1
Query:    4 YIEHHLKNPPS----VPSDKLTHVYTAILKPDNELRILIDGEEKQKANFLAADDFQPPLIXXXXXXXXXXXXXXXXXXRAKIPDPDAVKPEDWDEDAPMEIEDEDAVKPEGWLXXXXXXXXXXXATKPXXXXXXXXXXXXAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPHIDNPNYKGIWKPQQIPNPNYFE-LDKPDFEPIAAVGIEIWTMQDGILFDTF 669
            Y E H K P +      +DK TH+YT IL PDN   IL+D       N L  +D  PP+                   R KIPDP+AVKP+DWDEDAP +I DE+A KPEGWL           A KP            AP+I NPKCE+APGCG W+RPM  NP YKGKW  P IDNP+Y+GIWKP++IPNP++FE L+     P +A+G+E+W+M   I FD F
Sbjct:  214 YEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLL--NDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNF 438          
The following BLAST results are available for this feature:
BLAST of FC875383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CALX_SOYBN1.697e-9171.04Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX1_ARATH7.131e-9069.68Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1... [more]
CALX_PEA1.178e-8466.97Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]
CALX2_ARATH1.178e-8465.16Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALX_HELTU3.428e-8465.16Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALX_ASPFU2.735e-5750.00Calnexin homolog OS=Aspergillus fumigatus GN=AFUA_... [more]
CALX_MOUSE1.659e-5446.75Calnexin OS=Mus musculus GN=Canx PE=1 SV=1[more]
CALX_RAT2.167e-5446.75Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1[more]
CALX_CANFA2.830e-5446.70Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3[more]
CALX_PONAB3.697e-5446.70Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC31403C12EF CTVClemen1 Citrus clementina cDNA clone C31403C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875383 ID=FC875383; Name=FC875383; organism=Citrus clementina; type=EST; length=711bp
GAGTACATTGAACACCATCTCAAGAACCCACCTTCTGTGCCCTCTGATAA
ACTGACTCATGTATACACTGCCATCTTGAAACCTGATAATGAGTTGAGAA
TTTTAATTGATGGAGAGGAGAAGCAGAAGGCAAATTTCCTCGCTGCTGAT
GATTTTCAGCCACCGCTCATTCCTGAGAAGACAATTCCTGATCCAGATGA
CAAGAAGCCTGAGGATTGGGATGAGAGGGCAAAGATTCCTGACCCTGATG
CAGTAAAACCTGAAGACTGGGATGAGGATGCTCCCATGGAAATTGAAGAT
GAGGATGCTGTGAAACCTGAAGGATGGCTGGATGATGACCCTGAGGAGAT
AGATGACCCTGAGGCCACAAAACCTGAGGATTGGGATGATGAGGAGGATG
GTGAATGGGAGGCCCCAAAGATTGATAACCCAAAGTGTGAAGCAGCCCCT
GGATGCGGCGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCCTACAAGGG
CAAATGGCATGCTCCACATATTGACAACCCTAATTACAAGGGTATTTGGA
AGCCTCAGCAGATTCCAAACCCCAACTATTTTGAGCTTGACAAACCTGAC
TTTGAGCCTATTGCTGCTGTTGGCATTGAGATCTGGACAATGCAGGATGG
TATTTTGTTTGACACATTTTGATATCAAGGATGAGAAAGTGCAGAGTCTA
TCGGGCTCTGC
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